Basic Information

Insect: Hormaphis cornu
Gene Symbol: -
Assembly: GCA_017140985.1
Location: CM029362.1:11452247-11454784[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.3 2.2e+02 2.7 0.3 1 13 67 79 67 81 0.87

2 15 0.0035 0.34 11.6 2.0 1 23 102 124 102 124 0.98

3 15 0.73 72 4.3 2.2 2 19 135 152 135 157 0.89

4 15 7.7e-07 7.6e-05 23.1 1.4 1 23 162 184 162 184 0.99

5 15 8.6e-06 0.00085 19.8 1.5 1 21 190 210 190 211 0.97

6 15 3.4e-05 0.0033 17.9 0.4 1 23 218 240 218 240 0.98

7 15 6.5e-06 0.00064 20.2 3.6 1 23 261 283 261 283 0.99

8 15 0.0052 0.51 11.1 3.5 1 23 289 311 289 311 0.94

9 15 2.4e-06 0.00024 21.5 6.9 1 23 317 339 317 339 0.99

10 15 0.05 5 8.0 1.1 1 23 345 367 345 367 0.90

11 15 2e-06 0.00019 21.8 4.0 1 23 373 395 373 395 0.98

12 15 1.4e-05 0.0014 19.1 5.8 1 23 401 423 401 423 0.98

13 15 0.0011 0.11 13.2 0.6 1 23 429 451 429 451 0.99

14 15 0.0019 0.19 12.4 6.8 1 23 455 478 455 478 0.94

15 15 0.91 90 4.0 2.4 1 23 484 507 484 507 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.3	2.2e+02	2.7	0.3	1	13	67	79	67	81	0.87
2	15	0.0035	0.34	11.6	2.0	1	23	102	124	102	124	0.98
3	15	0.73	72	4.3	2.2	2	19	135	152	135	157	0.89
4	15	7.7e-07	7.6e-05	23.1	1.4	1	23	162	184	162	184	0.99
5	15	8.6e-06	0.00085	19.8	1.5	1	21	190	210	190	211	0.97
6	15	3.4e-05	0.0033	17.9	0.4	1	23	218	240	218	240	0.98
7	15	6.5e-06	0.00064	20.2	3.6	1	23	261	283	261	283	0.99
8	15	0.0052	0.51	11.1	3.5	1	23	289	311	289	311	0.94
9	15	2.4e-06	0.00024	21.5	6.9	1	23	317	339	317	339	0.99
10	15	0.05	5	8.0	1.1	1	23	345	367	345	367	0.90
11	15	2e-06	0.00019	21.8	4.0	1	23	373	395	373	395	0.98
12	15	1.4e-05	0.0014	19.1	5.8	1	23	401	423	401	423	0.98
13	15	0.0011	0.11	13.2	0.6	1	23	429	451	429	451	0.99
14	15	0.0019	0.19	12.4	6.8	1	23	455	478	455	478	0.94
15	15	0.91	90	4.0	2.4	1	23	484	507	484	507	0.95

Sequence Information

Coding Sequence: ATGTACATTTTCTTGATTTTAATAAATTTGTGTATTTACTTGCTATGCAAGATGACAGACAAAGTGAATTATGATGATAGCGGATTGTCAACCTCTTATGAGGAAACACTATTATCCAAGGAAAACATAGAACTCATATCTGCCAAAACTACCAAAAAAGATTTTCTAGATAATATAACATACATGTTCCACAACATTTTCAAATGTCTTCGATGTGAATTGACTTTTGAGAATGAACACCAATCACACAATTGTATAACATTGCCATTGAATGTCAATAAACAAAAGAAATTGAAACGAGTATTTAAATGTTATTTGTGTGATAAACACTATCCTTTCCCATCTTTAGCTATGTTGCATTTGAAACGTCATCAAAAATATACAGACAGTGAAGTTGTCAATGAGTGTAGTATGTGCAGTTCTAAGTTTCAAAGTCCCACAGAACTAAAAGATCATTGTGAAAAGGAGCATAAAATTAAACAGTACCAATGTACTATTTGTAATAAATTATTTAAACAGGCTAGGAATCTACAATATCATATCATGAGCCATTCTGGAGACAAACCATTTCAATGCGAGTTATGTGAACACAAATTCACTAGAGCAGATCATTTGGCCAGACATCAGAGAGACAACTGTGAACAAATGGAGTTTGAATGTGATTTATGTGGAAAAATATATAATACCAAAAGAGGCGTTAGAACCCATTTGAAAGTTCATTATGACAGTCCAAAGCCTGGTACCATATGGGCGTTGTATACAGAATCCGGACAAAAATATTACGAATGTAAATTGTGCAGTAAAACGTTTTCTCAGTTTTCCAGATTCAAAGAACATATACGGACACATACTGGTGAAAAGCCTTTTGAATGCCAAATATGTAATAAAAAGTTTACTTGCCAATATAAACTCAAGATGCATGGTGATGTACATACTGACACTAGACCATTCAAATGTGATTATTGTGAGCTGTGTTTTAAAAATCGAAGGTACCTTAATAAACACATGCGCAAACACGATGAACAAAAACGATATCAATGTCAAATTTGCTATAAAGAGTTTCAATGGTATAATAGTCTGAAATATCATGTTGCCTCGCACATTGGTGACAAACCATACGCGTGTCTTAAATGTAATAAATCATATTCACATCTCAGCTCCTTAACAACCCACCAGCGCACTCATACCAGTGAAAAGAATCATAAATGTCAAATTTGTAACAAGAAATTTGCTCATTACAGCACGTTAAAAAGTCATCTGATTACCCATAATGTTGTTAAACCATTTAAGTGCCATCTGTGTCCAGCTCAACTTGTTACGATTGCATCTTTAAAAACTCATTTAAATACTCACAGTGAAGATTATCAGTGTACTTTCTGTGGTCATACATTTTCCCAGCTATCAAATTTGCAATTCCACAAATGTAAAGTACACGTTAAAACAAAATTCTACGATTGTTATATATGTGAAGATAAATTTTGTTCAAAACTCCTAGTTAAAGAACATTTAAAACAACAACATAATATTCAGTTTACGAAATCATTTATAGAAGAAGATAATAATTTTGAACATGATGTAGATAATTTATACAAAGGTGTAATACATTAA
Protein Sequence: MYIFLILINLCIYLLCKMTDKVNYDDSGLSTSYEETLLSKENIELISAKTTKKDFLDNITYMFHNIFKCLRCELTFENEHQSHNCITLPLNVNKQKKLKRVFKCYLCDKHYPFPSLAMLHLKRHQKYTDSEVVNECSMCSSKFQSPTELKDHCEKEHKIKQYQCTICNKLFKQARNLQYHIMSHSGDKPFQCELCEHKFTRADHLARHQRDNCEQMEFECDLCGKIYNTKRGVRTHLKVHYDSPKPGTIWALYTESGQKYYECKLCSKTFSQFSRFKEHIRTHTGEKPFECQICNKKFTCQYKLKMHGDVHTDTRPFKCDYCELCFKNRRYLNKHMRKHDEQKRYQCQICYKEFQWYNSLKYHVASHIGDKPYACLKCNKSYSHLSSLTTHQRTHTSEKNHKCQICNKKFAHYSTLKSHLITHNVVKPFKCHLCPAQLVTIASLKTHLNTHSEDYQCTFCGHTFSQLSNLQFHKCKVHVKTKFYDCYICEDKFCSKLLVKEHLKQQHNIQFTKSFIEEDNNFEHDVDNLYKGVIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -