Hcor010538.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- -
- Assembly
- GCA_017140985.1
- Location
- CM029359.1:3627215-3630092[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00041 0.041 14.5 0.3 2 23 135 156 134 156 0.93 2 19 0.00044 0.044 14.4 0.2 1 23 162 184 162 184 0.94 3 19 0.00091 0.089 13.4 0.9 1 23 192 214 192 214 0.96 4 19 1e-06 9.9e-05 22.7 2.0 1 23 220 242 220 242 0.98 5 19 6.9e-06 0.00068 20.1 0.2 1 23 248 270 248 270 0.98 6 19 7.4e-07 7.3e-05 23.2 1.7 1 23 276 298 276 298 0.98 7 19 0.013 1.3 9.8 1.2 3 20 306 323 304 325 0.92 8 19 5.4e-09 5.3e-07 29.9 0.8 1 23 332 354 332 354 0.97 9 19 1.7e-05 0.0017 18.9 0.4 1 23 360 382 360 382 0.97 10 19 3e-06 0.0003 21.3 0.3 1 23 388 410 388 410 0.97 11 19 2.2e-07 2.2e-05 24.8 0.6 1 23 416 438 416 438 0.98 12 19 1.3e-07 1.3e-05 25.6 0.5 1 23 444 466 444 466 0.98 13 19 1.2e-06 0.00012 22.5 0.1 1 23 472 494 472 494 0.97 14 19 0.091 9 7.1 1.5 1 21 505 525 505 526 0.94 15 19 5.8e-05 0.0057 17.2 1.2 1 23 540 562 540 562 0.97 16 19 3.6e-05 0.0036 17.8 1.1 1 23 569 591 569 591 0.96 17 19 1e-06 0.0001 22.7 3.8 1 23 597 619 597 619 0.98 18 19 0.00023 0.023 15.3 1.2 1 23 625 647 625 647 0.98 19 19 0.00045 0.044 14.4 1.6 2 23 656 677 656 677 0.92
Sequence Information
- Coding Sequence
- ATGAATGGTGCTGTTGAAATTATTTTACATGAGAAATCGGGTGAAAAACGACTGGTCACTGTTCAAGGAGCAACTCTTGAAACTACAGATGATCGACGAATACATGAAAATATTGGTTATGGAATATATGTTCAAGGATTAAATGGGGATTTGGCACAATTATTGTTGGATCAAGAAGACGTAGGAACCATGACTGTTGAAAGTTTAGCAAAAATAATCAATGCTCAAGAAGCAGCAATCCAATTAAATAACGTGAAAATTGAAAATGTTGATTTATCTCATCAAGACGGCACAACAGCAATTTATATTACAGAAGAAAAAACTTTATTGGATATTAATATGGCTAATGAAGCTGTTGCAAACTGTGAAAGTCTCATGCAACCTGATCCAATGAATGAATTGCAATGTCAAAAATGTGGTAAGCAATTTGCTGATATTAACACATTAAAATCCCATGAGGTAATTCATGAAGAGGATTGTAACTTTTTGTGTAACGTCTGCGGAGAACATTTTGATAAAGCGAGTGCATTGAGTGAACATTTGGTTATTCACCGTAGCGATGACATTAAGTTACACCACTGTGAAGTTTGTGATTTAGTATTCCCTGATGAACAATCATTGAAAGAACATTCTCAAGTTCACTCTCGTCAGAAAGTTTACACTTGTGAAAAATGTGATAAAACATTTCCATCAAGTTACAGATTGTTTCGTCATATGACGATTCACACAGAAAGTCCTCCATTTGTTTGTAATCAGTGCGGCGTGTCTGTGGTCAACAAGAGTGACTTGAAACTTCACATTATGAAACATACTGGTAGCGCCGTGTATACATGTTCCGAGTGTGATAAGAGTTTTGCAAAGCCATCATGCTTGCAACAGCATTTAAGCGTTCATACTGGTGATCGACCAGTGCACTGTAAAACCTGTAACACGACTTTTAGTTATTCCAGTCCATTGTGTGGACATTTAATAGCTAACGCTAAATTAAAACCGCATCCATGTACCGTATGTGATAAATCATTTCGCAGGCCGTCTGATTTAGAGCGTCATATGATGATTCATACTGGGGAACGTCCATTTGTTTGTCAAGTTTGTTCTATGTCGTTCATTACAAACTACAATTTGAAAGTGCACTCGATGATTCATAATGGAGGTTTGCCGTATCCGTGTTCATCATGTGAAAAAGCGTTTAGCAAACCTTCCGAGTTGCAGAGACATAAACTAGTACATTCAAGAGAAAAACCATTTTCATGTGTAAAATGTGAAGCAACATTCACTAATCAAAGTAACCTTAAAGCTCACATGATAACACACACAGGAAGAAAACCATTTCCCTGTCGCATTTGTAACAAAGGATTTACGCGACCGTCAGACGTAAAACGTCATATGCTTACACACACAGGCTGCCGTCCATTCGCTTGCGATGTATGTGGCTTGGCCTTTGCTGATTCTTCCAATCTGAAAAAACACTCGTTGACTCATTCTAAAGAAGATCAAAAACTTGTCTTGCAACACCAGTGTCCATCGTGTTGTGTGTCATTTTATTCGTATGAACAGCTTAATGAACACATGATCTCTTGTAGTAGTACTAGCAATAATGGTCAGGCCGAACCAAAGTATTCGTGTAAGGAATGCGGTGCTACTTTCAATCATGCATTGCACTTACAAGAGCATGCCATAATGCATTCTAATCATCGTTCTGTGCACAGGTGCGATGTGTGTAATAAGACGTTCATACAAGAGTCGTTTTTAATTGCACACAAAGCTTCTCACACAGAATCACGACCTTATCGTTGTGATATATGTTTTAAGAGATTCAAGAGTTCTTCTCATCTGAAAAACCACGTGATGATACACACTGGTGTCAAGCCTTTTGAGTGTTCGGTTTGTAAAAAATCATTCTTAAAATTAGCCTCATTAAGACGTCATTATGCCACGCACGACCGTGTAAATTACTCATCCGCCGTATGCCATCAATGCGGCAAATCATTTCTTAATCAAGAATATTTAAAAAAGCACAGTGTAGTACACGCTGATTCGTAG
- Protein Sequence
- MNGAVEIILHEKSGEKRLVTVQGATLETTDDRRIHENIGYGIYVQGLNGDLAQLLLDQEDVGTMTVESLAKIINAQEAAIQLNNVKIENVDLSHQDGTTAIYITEEKTLLDINMANEAVANCESLMQPDPMNELQCQKCGKQFADINTLKSHEVIHEEDCNFLCNVCGEHFDKASALSEHLVIHRSDDIKLHHCEVCDLVFPDEQSLKEHSQVHSRQKVYTCEKCDKTFPSSYRLFRHMTIHTESPPFVCNQCGVSVVNKSDLKLHIMKHTGSAVYTCSECDKSFAKPSCLQQHLSVHTGDRPVHCKTCNTTFSYSSPLCGHLIANAKLKPHPCTVCDKSFRRPSDLERHMMIHTGERPFVCQVCSMSFITNYNLKVHSMIHNGGLPYPCSSCEKAFSKPSELQRHKLVHSREKPFSCVKCEATFTNQSNLKAHMITHTGRKPFPCRICNKGFTRPSDVKRHMLTHTGCRPFACDVCGLAFADSSNLKKHSLTHSKEDQKLVLQHQCPSCCVSFYSYEQLNEHMISCSSTSNNGQAEPKYSCKECGATFNHALHLQEHAIMHSNHRSVHRCDVCNKTFIQESFLIAHKASHTESRPYRCDICFKRFKSSSHLKNHVMIHTGVKPFECSVCKKSFLKLASLRRHYATHDRVNYSSAVCHQCGKSFLNQEYLKKHSVVHADS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418464;
- 90% Identity
- -
- 80% Identity
- -