Hcor005610.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- -
- Assembly
- GCA_017140985.1
- Location
- CM029357.1:22331732-22332512[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-10 7.5e-08 32.1 0.0 1 41 11 51 11 55 0.93
Sequence Information
- Coding Sequence
- ATGTCAAAGAGGGGAAGTTATGGTAAATGGACTGAGGATGAATTGCAGATGGCTGTTGCAGCGTATAAAAATGGTGATGCTGGGTTGAACAAGTGTGCAAAAGTGTATGGTATTCCAAAAGCTACGTTAAAAAGGCATTCAGAAAATAAAAATAGTAATGCAAATCTAGTCAAAGTATTTGGCAGACCTACTGTATTTGATTCAAACATGGAAAAACAGTTAGTACAGCACATTTTACAATTAGAATCCATGTTTTTCGGTTTTACAATTAATGACATACGTAAGTTGGCTTACGATATTGCTGAGAAGTATTCGTTAAATCATTCTTTTAATCGGGAAAAACAAATCGCTGGGAAAAAATGGTTTTACTCATTTATGAAACGTAATCCAACACTTACATTAAGACAACCTGAAGCTACATCAATGGCAAGGACTAAAGAAAAAGATAAGACTGAAAAAATTATGAAAAAAGAAAATACTGAAAAAATTATTCAAAATATAGAAATCCCCACCAAAAAAAAGAAAATTGAAAATGTACAATCGACATCAAAAGGGATAAGCAAATCAGACCATGGGAGTTGGTATTGCCCACTTTGCAAGGAAGCAAGACTGTTGGATATGATAATGTGTCAACAATGTGATGTATGGTTCCATGAAGACTGTTTAGGGATTCAGCTAGAAGATAATTTTTCATTATGTCATTGGTGTTCTGAAGTCAATAAGTAA
- Protein Sequence
- MSKRGSYGKWTEDELQMAVAAYKNGDAGLNKCAKVYGIPKATLKRHSENKNSNANLVKVFGRPTVFDSNMEKQLVQHILQLESMFFGFTINDIRKLAYDIAEKYSLNHSFNREKQIAGKKWFYSFMKRNPTLTLRQPEATSMARTKEKDKTEKIMKKENTEKIIQNIEIPTKKKKIENVQSTSKGISKSDHGSWYCPLCKEARLLDMIMCQQCDVWFHEDCLGIQLEDNFSLCHWCSEVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811886;
- 90% Identity
- iTF_00811897; iTF_00811887; iTF_00811889; iTF_00811890; iTF_00811891; iTF_00811892; iTF_00811893; iTF_00811894; iTF_00811895; iTF_00811896; iTF_00811900; iTF_00811903;
- 80% Identity
- -