Hcor017596.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- bab1
- Assembly
- GCA_017140985.1
- Location
- CM029362.1:5336275-5398030[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-15 2.4e-12 46.5 0.0 1 41 377 418 377 422 0.93 2 2 0.97 5.6e+02 0.5 1.5 6 31 511 537 507 538 0.76
Sequence Information
- Coding Sequence
- ATGCAGCCGAGCAACGGCGGCGGCGCCTGCAAAGACGCGCCGGCGGCCTCCGAGCGGACAGGCGGCGGCGGCAACAACCAACAGTTCTGCTTGCGGTGGAACAACTACCAGAGCAACCTGACCAACGTGTTCGACCAGCTGCTGCAGAACGGCACGTTCGTGGACGTGACGATCGCGTGCGACGGGCACACGCTCAAGGCGCACAAGATCGTGCTGTCCGCGTGCAGCCCGTACTTCCAGAGCATGCTGGCGGAGAACAAGTGCAAGCACCCGATCGTGATCCTCAAGGACGTGCAGTGGCCCGAACTGCGCGCCGTCGTCGACTTCATGTACAAGGGCGAGATCAACGTGTACCAGGAACAGATCGGGCCGCTGCTCCGGGTGGCCGAGACGCTCAAGGTCCGCGGTCTGGCCGACGTGAGCAACGAGCAGTTGACCGGCGGCGGCGGCGGCGGCGGAGAGCCGCAATCCGCGGCCACCGTGGTGACGCCCACGGCGGTCGCGCCCGAGTCTCCCAAGCAGCCGGCCCGCAAGAGGCACCGGCTGTCGCCGCCGGTGACCAGCAGCCCGGAATCCGTAGTGTCCGAGATGGTCACGGGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTTGGAGATAAAACCCGGCATAGCCGAGATGATACGCGAAGAGGAACGGGCCAAAATGTTTGAAAATTCTCAAGCCTGGCTCGCCTCCACGTCTTCGCCCATGACTTCCGACAGTTACCAGTACCAGCTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAGCCTCGTGCACAACCTGCGGTTCAGGGAACGCGGTCCGCTCAAGTCGTGGAGGCCCGAGACGATGGCCGAGGCCATACTGTCCGTGCTCAAGGAGGGCCTGTCGCTGTCCCAGGCCGCCCGCAAGTACGACATACCCTATCCGACGTTCGTCCTGTACGCCAACCGGGTGCACAATCTGCTCGGTCCGTCCGCGGACGGCGGCGCGGACTTAAGGCCCAAAGGCAGAGGACGTCCTCAACGGATATTATTGGGATTCTGGCCAGAAGATCACATTCAGAACGTCATTAGGACCGTCGTGTTTAGAGACGCGCAGAACATCAAAGAAGAAGCACTACACCTTTACCCCAGAATACCGTGTTTGTCGGACCCGATGTCTGCAGGCGGTGGTCACTATGGCAACAACAACGCCGCGCAGTCGGCGGACGGTGGCCCCGTGTCGCCAAACTCGGCCGCGGCCGCCGTGGCCGCCGTCGCGCAAGGCATACGGCAGCAGATGATGCAGGCGGCCGCCGGACACGGCATCTCCCCGTCGTCCAGCGCGGTCGACGCGTTCGCCCTGCTCGCCTCTTCGCATCTGCCCAGCCCGGCCGACATGTCGCCCAACTCGACGCCGCCCAACTCGCCGCTGGTGTCCAACAACAACGTCGAGGTCAGCCTGAGCGGCTATAAAAGGTCCATAGACCACCACTCGAACCAGGACGACGGCGTGTTCGTCGAGGACATCGACGAGCTCGTGAAGAACAGCCATTGCACCGGCGGCACGTCCATGGGCAACACCATCGACCAGCAGCCGCTGCCGTTGGTCATCGAGCAGCGGACCGAATAA
- Protein Sequence
- MQPSNGGGACKDAPAASERTGGGGNNQQFCLRWNNYQSNLTNVFDQLLQNGTFVDVTIACDGHTLKAHKIVLSACSPYFQSMLAENKCKHPIVILKDVQWPELRAVVDFMYKGEINVYQEQIGPLLRVAETLKVRGLADVSNEQLTGGGGGGGEPQSAATVVTPTAVAPESPKQPARKRHRLSPPVTSSPESVVSEMVTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLEIKPGIAEMIREEERAKMFENSQAWLASTSSPMTSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDPMSAGGGHYGNNNAAQSADGGPVSPNSAAAAVAAVAQGIRQQMMQAAAGHGISPSSSAVDAFALLASSHLPSPADMSPNSTPPNSPLVSNNNVEVSLSGYKRSIDHHSNQDDGVFVEDIDELVKNSHCTGGTSMGNTIDQQPLPLVIEQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00812112;
- 90% Identity
- iTF_00812112;
- 80% Identity
- iTF_00812112;