Hvit029751.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638109.1:5476214-5501061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.5 6.7e+02 1.9 2.7 1 23 226 248 226 248 0.84 2 12 0.00054 0.042 15.2 1.3 1 20 305 324 305 326 0.94 3 12 0.34 26 6.4 0.9 1 21 726 745 726 746 0.93 4 12 0.19 15 7.1 0.6 1 23 758 780 758 780 0.87 5 12 0.00087 0.068 14.5 0.0 2 23 786 807 785 807 0.97 6 12 0.0011 0.089 14.1 0.4 2 23 910 931 909 931 0.94 7 12 0.0014 0.11 13.9 0.7 1 23 946 968 946 968 0.98 8 12 8.1e-07 6.3e-05 24.0 3.3 1 23 974 996 974 996 0.99 9 12 0.0044 0.34 12.3 1.0 2 23 1002 1023 1001 1023 0.95 10 12 0.00043 0.033 15.5 4.3 2 23 1030 1052 1029 1052 0.93 11 12 6 4.7e+02 2.4 0.1 1 13 1057 1069 1057 1075 0.82 12 12 0.045 3.5 9.1 0.2 3 23 1089 1110 1088 1110 0.92
Sequence Information
- Coding Sequence
- ATGTCTGAAAATAGGAAGAGAAGTAGAAAATCAAAGTTAGAAGTTCGCGATGAATTCGGTGAATACGAGGAGGAGGTAGCTGTCAAAACTATCTCGCGTTACAAGAAGaaaaaattaagtgaCGCAGCTCTTGTCAGATATATCCTAAAACCATCTTATCGGATAAGATTTGATCATGACTACTGTAGACCGGGCTCATTAACCTTCCTACCAACAAACTTTCTATTTGAACTCCCGGAGAACTCTACCATCCCAAACACTGAGGGTGAGGTCTTCTGTGACCAAAAAGAAACCACCAATAATATTCATCAGAAGCAATCTAATCAACCCCTTCAAGTGGAATCTAAAGAGCAAGTTAAAGCAAAAGTATCAGAAAAGAAGAATAACTCGAAGATGGATTGCATAAACGTAGCTACAGGCAGCAAAAATCAGGGTACAGAGATAAGAACTTGCAAATACGAGCTGGAGAATATTCTACATGTATCGAAAGCAATCGCTGAGAGCTCTGTGAACCCAGCAGATAGGATACTCGATATCGAGATGAGGAATCTGTGGGGTAGTGTTCAACAGAATCCTGAAGAGCCTGATCAGTATGAAGCGCTACTGCAGAATGTATTACAAGTCTGGCAGATTTGGTTCTCCGAAGCAAGGCTTATAAGGGACGCTCCTCTGTTCTACCAATGCCACATCTGTAATGTCGCTTGGTGGAGGCTGCAGCCGTTCCGTGAACACATAAGAACTCATGACATTGATTCTTTGAAAGTAATTCTCAAAGAGAACATACATGAATGCTTCTTTGTTGCTTGTAGCCGGCAAGATCGGTTGGTCAGCAACCTTATATACATTGATATCGATGAAGATTGCTATCGCTGCAGCAAAAACGTTGACTTCCACAAAGACAATTGTCAAGGCTATGTCTGTAATCGATGCAATAAAAGCTTCTACACTTGCTCGATGCTGATTCAGCACGAGTCTGTATGCATTTACTCGAATGCAAGTAAATTTAACGTAGCTAAGAATAGATGGTGTATGATCTGCAAGGTCTATGTGAGCTCTTTAGCTGATGTTGATAAACATTTGATACAAGCGCACTCTGTCCGAACGGACTTACCTGTACCGGTTATATTTAAGAAATGTGTGACGTGTaacagtaaatattttatatacagcATGCACAATTGCAGTAGGAGTTGTAAAAACTCGAGCTGTATATACTGCTGTAGGAAATTTGCAACGAAACCGCTCGCAATGGCTCATATACAAGCCCAAACGAACACAGAGATGTATTGTGGGATATGCAACGAGGTTATCAAGTCAAAATGTCTGAAAATGGAGCATTTCTTGAAACATTCTGCTAACTATGAATTGACGTATAAATGTACAATATGCTTGAATCAAGAATTATTGTTTCTGGATGAGAATTCAATAAAGATGCATAGATATCTGTGGCATCATAAGAAATCGGATAAAAGGAGATCTTTCTTTGAAATGatGCTGGTACCAAAACGATGTTTGCAAGAAGATGATTACAGAGACGCATTTGTACCTGATGATGTCTCCATACAAACCGCATCACAGACACTTACTATTTTGACAGCTGATGTCAGCGTGACAGTCGATGAAATTGACATCAAAGAGGAACCTTTAGACGGTGACAATGGCGATTATGAAGATATGCTTTACAGAATGTTTAATGAAGACAAAGATTCAAGTTCAAAAGCCAATGACGAACCAAACGAAGAATTAGATTAtacaaatgtcaaaataaagATGGAAAAATTGGATGATAATGTTATTGTTAAAACGGAACCAGCGGATGATATAGACATTAATGAGAATCCGATTGATGATGTCGAGGATTTATATATTAAAACGGAACCCGTTGAGGATGAAATGGAAAGTGTCACAAACGCTGAGATTATGAAAGAGAAAGATCATATGAAAGATGATAACTTAATCGCAAAGACAATCAAAGTGGAAGATGTAGAGATGGCTGTCAAAGAAGAGGATAACAGTTCTGTATTCGAAGGACTAATATCAGAACCAAATGTCAAAACCAATCAGCTTATTAAGAAAGGAAGGAAAGAAGTATCCAAATCTTCGATCAAAGTCAGCCCCGATGAAATGACATTCAATCATATCAACACCAGAGGGTTATATAAgaagaaaaaagtatatgtttGCTCGAAATGTGGATACACAGCTCAACACAAGCAATATAAAGTACATATACAATCAAAATGTTTTCTCACACCAAATATTGATGGCAATTTCCCTTGTACGAAGTGTGGATTGACTTTTGCTTTGTTTAAAGATTATGTGCTTCATTTTGGTTCTCATGGTTACAAAATGATGTCTTGTCCTAAATGTGGGGAGGTTTTTATATCTATTGTGAAGCTGTTGGCTCATGTACAAAGGCATATAAAGTTCAATTTTGTTGGTGTCCATGTTTTGGCGAAGGGTGGTGTGGAATCTACGAGAGCTAATAAGGAACAAAAATGTCAAGAATGCGAAAGCCAGGTGTCGAGTGACAATATGTTTTCGCATTGGGAAAATCATCTCAAACTATTAAATGAAAAGACTAATTCGACGGGAATTAAAGAGGAGAAAGAGGAACCGGAACTGACGATAGATTTCGAACGAGTTACTATGAACAATAAGGAATTAGACCCCATTGCGCTTAAAGTGGCACTAGATCACCTCCAATCCACTTCGTCGACGGAGAAAGAATGTGGGATATGCTATAGAGCGTTCAGTCGACGTTATGACGTGAAGCGCCATCTAGTGGAGCATCTACTGATGGACGCGCATATGAAGAAATCTAAACTCAGGGCTTTCCAATGTCAGATTTGCGGTGAGGAATTTCAACGTCCGGAGAAATATAAATTTCACATGCGCGGTCATGCTTCAATGCCGATATTTAAATGTGAACTATGCAACAAGACGTTTAGTGATTCCAGTAACTTCGCTAAACACAAGAAAACCCACAATGTGCGCGTACTCATCTGCGATTTGTGCAGCAAGAAATTCCATTCGAAGTTAGCGCTCGAGAAGCATATTTTGGAACATGGAAGAGTACGGCCCACGAAATGCCAATTCTGTGATAAAACGTTCTCAACGAAACAGCAATACAAGAAACATAAGTACTCAgTGCATGTAAAATACAAGTTTAAATGCGTTCTATGCGATATACCATTCTACAGTTTGCAGATGAAATGGGATCACAATTGGGAGgtACACAAGGAGAGAAAGCAAGCAGCCGACTGCCCTATCTGCTTGAAATCCTTCAGGAAGTTCCAAGACGTGAGGGTTCACGCCAAAGCTGAGCACAAGGCAGAAGTCGCAGTTTTGAAACAGAAAAAATCGCGCAGAGAAACTATACAATTCTTCTCAGTGAGAGATCTTGATGTGGATAATGAGATTTTAGTGGTGCGACAGTGA
- Protein Sequence
- MSENRKRSRKSKLEVRDEFGEYEEEVAVKTISRYKKKKLSDAALVRYILKPSYRIRFDHDYCRPGSLTFLPTNFLFELPENSTIPNTEGEVFCDQKETTNNIHQKQSNQPLQVESKEQVKAKVSEKKNNSKMDCINVATGSKNQGTEIRTCKYELENILHVSKAIAESSVNPADRILDIEMRNLWGSVQQNPEEPDQYEALLQNVLQVWQIWFSEARLIRDAPLFYQCHICNVAWWRLQPFREHIRTHDIDSLKVILKENIHECFFVACSRQDRLVSNLIYIDIDEDCYRCSKNVDFHKDNCQGYVCNRCNKSFYTCSMLIQHESVCIYSNASKFNVAKNRWCMICKVYVSSLADVDKHLIQAHSVRTDLPVPVIFKKCVTCNSKYFIYSMHNCSRSCKNSSCIYCCRKFATKPLAMAHIQAQTNTEMYCGICNEVIKSKCLKMEHFLKHSANYELTYKCTICLNQELLFLDENSIKMHRYLWHHKKSDKRRSFFEMMLVPKRCLQEDDYRDAFVPDDVSIQTASQTLTILTADVSVTVDEIDIKEEPLDGDNGDYEDMLYRMFNEDKDSSSKANDEPNEELDYTNVKIKMEKLDDNVIVKTEPADDIDINENPIDDVEDLYIKTEPVEDEMESVTNAEIMKEKDHMKDDNLIAKTIKVEDVEMAVKEEDNSSVFEGLISEPNVKTNQLIKKGRKEVSKSSIKVSPDEMTFNHINTRGLYKKKKVYVCSKCGYTAQHKQYKVHIQSKCFLTPNIDGNFPCTKCGLTFALFKDYVLHFGSHGYKMMSCPKCGEVFISIVKLLAHVQRHIKFNFVGVHVLAKGGVESTRANKEQKCQECESQVSSDNMFSHWENHLKLLNEKTNSTGIKEEKEEPELTIDFERVTMNNKELDPIALKVALDHLQSTSSTEKECGICYRAFSRRYDVKRHLVEHLLMDAHMKKSKLRAFQCQICGEEFQRPEKYKFHMRGHASMPIFKCELCNKTFSDSSNFAKHKKTHNVRVLICDLCSKKFHSKLALEKHILEHGRVRPTKCQFCDKTFSTKQQYKKHKYSVHVKYKFKCVLCDIPFYSLQMKWDHNWEVHKERKQAADCPICLKSFRKFQDVRVHAKAEHKAEVAVLKQKKSRRETIQFFSVRDLDVDNEILVVRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -