Hvit029602.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638109.1:2835213-2852389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.013 1 10.8 3.0 1 23 117 140 117 140 0.96 2 10 0.37 29 6.2 1.7 1 23 172 194 172 195 0.92 3 10 0.22 17 7.0 2.9 1 23 205 227 205 227 0.97 4 10 0.0012 0.093 14.1 0.5 2 23 232 254 231 254 0.95 5 10 2.7e-05 0.0021 19.3 1.9 1 23 261 284 261 284 0.93 6 10 0.012 0.94 10.9 2.1 6 23 294 311 290 311 0.91 7 10 2.1e-05 0.0017 19.6 0.1 1 23 322 345 322 345 0.94 8 10 3e-05 0.0023 19.1 1.8 1 23 351 374 351 374 0.96 9 10 0.0097 0.76 11.2 1.2 3 23 385 405 384 405 0.96 10 10 0.00072 0.056 14.8 1.8 2 23 412 434 411 434 0.95
Sequence Information
- Coding Sequence
- ATGattcAACAACCAAAAACAAAACTTAACAACCTACAACAAACTATCACAACAACTTGCACACTTTCTGAAAAAGAATCCGATTTGAAGCTGGAACCAGCCAAAGAGAGTTCACCATTTGAATTCATAACCGACATTAAAGTAGAACATGACTCGAGTTCCAATTTCGAAAGTGATTTGCCGCTATCCGAAGTGAAAAGGACGGTAGGATCGAAAACGAAACGGGCGAAATCATATCCAACAGAAGATAAGTACAAAGGAAAGATTATCGTGTACAATTTGTGCAGAGAGGAGTTGGAGTTAGAAAGAGAGAGGGAATCTAAGAAGGATTCTTATTTGAAACTGCcgtttaaatgtgaaagttgtgTAAAAGGATTTGACCATGAAAACACACTGAAAAATCATAAAGAGAAGCAACATACACAGAAAAAAGGTGGAATTCAGTGCGATATTTGTAAAAGTATTCTTGGGTCGTTATCATATAAAGAACATACCAGAAGACATTTTAGAAGATTTCAATGCGTGGTGTGCGGCAAGCGCTCTCAAGATATCTACTCGATCTCGCAGCATTTCAACCAGCATCACGCTGACGCGGGTCTCATCAGCCAGGAGTTCCAGTGCAACCAGTGCGACTTCACTACCGACTCGAACCGCGTGTACCGCTACCATCGCGACAAGCACAAACAGAAGCAGCAGTGCAGTGAGTGTGGCAACACTTACGTCAGCGTCAACTCCCTGCGCGTGCACATGTTACACGTCCACAAGCAATCAGCGCGCGTATACAAATGCACTCTCTGTGACAAGTCGTACAGCAGTAAGTCAGGTTTACACACGCACAGTGCGTCCGCGCACGAGCGAGCGGTCGCATACTGTGCGCCGTGCCGTGCGCACTTCCGAACCAAGAACGGACTGACGAACCATCTGCGCACGCACTCAGCACATCTCGCGTCGCAAAACAAAAGaTTCACGTGCGGAGAATGCGACGCTAAATTCGTAACAAAATCAGCTCTTCAGTCACATATCGACTGGGACCATTTGAAAACAGTCAAGCACGAATGCGTGAAATGTTCAAAGGTATTCAAGTCGTCGGTTACACTTCGTAACCACATCAACTACGTTCACGAGAAGAAACGACCACCGCGCGATAAGATTTGCGATTACTGCGGACGCGGGTTTACGaCTACAGCAATTCTGCGTTGCCACATTCGCACTCACACCGGCGAGCGTCCATTGCGATGTTCGCACTGCACCGCCACGTTCGCGCACTCCGCCGCTCTCTATACACACATCAAGCTGCTACATAAGTCGCACTAG
- Protein Sequence
- MIQQPKTKLNNLQQTITTTCTLSEKESDLKLEPAKESSPFEFITDIKVEHDSSSNFESDLPLSEVKRTVGSKTKRAKSYPTEDKYKGKIIVYNLCREELELERERESKKDSYLKLPFKCESCVKGFDHENTLKNHKEKQHTQKKGGIQCDICKSILGSLSYKEHTRRHFRRFQCVVCGKRSQDIYSISQHFNQHHADAGLISQEFQCNQCDFTTDSNRVYRYHRDKHKQKQQCSECGNTYVSVNSLRVHMLHVHKQSARVYKCTLCDKSYSSKSGLHTHSASAHERAVAYCAPCRAHFRTKNGLTNHLRTHSAHLASQNKRFTCGECDAKFVTKSALQSHIDWDHLKTVKHECVKCSKVFKSSVTLRNHINYVHEKKRPPRDKICDYCGRGFTTTAILRCHIRTHTGERPLRCSHCTATFAHSAALYTHIKLLHKSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01171004;
- 90% Identity
- -
- 80% Identity
- -