Hvit029115.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- TY3B-I
- Assembly
- GCA_951804965.1
- Location
- OX638108.1:6351381-6366752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.74 58 5.3 0.8 1 23 987 1009 987 1009 0.96 2 9 2.1 1.6e+02 3.9 0.1 2 23 1077 1099 1076 1099 0.91 3 9 0.11 8.3 7.9 1.0 1 23 1103 1125 1103 1125 0.96 4 9 0.0043 0.34 12.3 1.6 1 23 1131 1154 1131 1154 0.85 5 9 0.041 3.2 9.2 1.2 2 23 1161 1183 1160 1183 0.91 6 9 4.1e-06 0.00032 21.8 1.3 1 23 1189 1212 1189 1212 0.98 7 9 0.00016 0.012 16.8 1.8 1 23 1218 1240 1218 1240 0.98 8 9 3.8e-06 0.0003 21.9 3.4 1 23 1246 1268 1246 1268 0.99 9 9 4.2e-06 0.00033 21.8 2.0 1 23 1274 1296 1274 1297 0.96
Sequence Information
- Coding Sequence
- ATGGATGGCGTAGCGTGTCTACTGGATGACGTGGCGGTGGCTGGTGCGACGCTGGAACAGCATAATCAGCGGCTGCGTCAGGTGATGCAGAAGCTGACAGATTTGGGATTTAGACTGAATAGCAAAAAGTGTGTTTTTGCTGCCAATAGCATCACATTTTTGGGACACATGATCGATGGCGAGGGACTTCATCCAGCACCCGCAAAAGTCAAAGAAATACAAGAGAAATCAGCTCCTACAAACAAGGAAACACTGAGGGCTTTCCTCGGTTTGTACAACTTTTATCAAAAGTTTTTACCCGATAGAGCGACTTTGTTGGAGCCGTTGTATCGGTTGCTGGAAGCGAAAACGCCCTGGAAGTGGGGTGAAGTCGAGCAGAAAGTGTTTGAGAAGGCTAAGCTATTGCTATCATCGGATCTCACATTGGTGGGATATGACTTAAACAGAGAGTTACTGCTCATATGTGACTCCTCGGAGTATGGAGTTGGCGCTATCATAGCACATGTCATGGATGATGGAACCGAGAGACCTATCATGATGGCGTCGCGTACTCTACAGACACATGAGCGAAGGTATGGACAGATTGACAAGGAAGCGTTGGCAATTATGTTTGGACTGTTGAAATTCCATGAATTCCTAGTTGGGCGCAGATTTTGTATTGTAACAGATCACAAGCCACTGGTTGGCTTGTTTAATCCGGCTAAACCCATACCTGATCAGATTTCGCCGAGAATGCTACGATGGTCTTTGAAGCTGGCTTGTTATGAATATACTATTAAGCACAGACCAGGGAAATATATTGGGAATGCGGATGCATTGAGCAGGTGGACTGCACCGTCTATGGGAACAGTGGCTGAGGAAAGGCTTAAAGAAGTATTGTTGTTAGAAGAACAACCAGCGGGCTGGAATCTTAGTGCAGAGAGGATCGCTACAGAAACAAAGAACGATTCTTTGCTCCAAAAAGTTTTATTCCATGTCCTTCATGGCTGGCCGAATAAGATCACTGACCCAGCTTTGCAGCCATTTTGGACCAGAAGGGAGGCTCTTTCACACACTAAAGACTGTTTATTGTGGAGTAACAGAGTCATAGTGCCAGCTAAGTTACAAGAGCAGGTACTGAAAATATTACATGCCCCACATGCGGGTATAGTCCAAACGAAGGCATATGCAAGAGGCTATGTGTGGTGGGTCCAGATGGATAACCAAATTGAACAGATGGTGGCCAGCTGTGAACAGTGTCAACTGGTAAGAAATAGTCCTCCAAGAGATCCACAGACTTGGGTTATGTCGGAAAAGCCATGGCAGAGAGTTCACATTGATTTTGCTGGACCGTTTCAtgggaaaacattttttgtgttgATTGATAGCTACAGTAAATGGATGGAAGCAGAAATAGTAAACACTATGAGTAGTGGAGCGGTAATAATGGTGATGAGAAGAATTTTTGCATCACAAGGGTTGCCCGATGTAGTGGTATCCGACAATGGTAGAGCTTTCACTTCAGAAGATTTTAATAGCTTTTTGCAGAAAAATGGGATCAGACATTTGCTTTCCCCACCGTACCACCCGGCGACTAATGGGCAGATTGAGAGAGCTATACAgacatttaagaataaaattaggAAAATGGAGACTTTAAATCTACCCTGCAGCGAAATGTTGAGCAAGGTGCTCTATTATATGCGAACGGTACCAAATAGCTCTACTAACAAAACTCCGGCCGAGATGCTCAACGGCCGAAAGTACAGAACGGCGATGTCGATACTCCACCCTGAGTCTTCACCGAACCGCGGCGAGATACAGTTGGAAGCGGCGGCGCAGCGCGCGCCCGCCAGGGGCTTTGTGGTCGATCAACCAGTGCTGATTCATATGTATGGAGCCGGGCAGAAGTGGCGGAGGGCCACAATAGAGATGGTGGAAGGCCCTAGCTCATACAGGGTGAGGACGGAAGATGGAGAGTTACATCGTCGACATGCCGATCAGATACTGGCAAGAACTGTACGTACAGAGTCAAGATTGACTGATAACCAAGATGGGTTGGATTCAGACTCACAACCACCTGATGAGCTGGTTGAACCGCCTATTGACATACCGCCCCCAGAGAGactTGTTTACAAAATGAGTGTGACTATTACTAAAAACAATGGACCCATCATAGACCCAGCACTATGCAGATGTTGTAGGGCCATTAAAAAATGTAGAATACTCACAGCTGAGTACACTTGGCAAGAAGAGAAAGAGGTCTACGCTGATATGGTGATGGACTGCTTCGGAATACTGCTTTCTCATGTAGACGACAGTGAGAAGGACTCGGGAGTGTGTGCTACTTGCGTGGTGCGATTGAGAGATGCAAGCGCATTCCGTCGGCAAGTGTTGCAATGTGAGGAACTGTTCCTGAACGCTAAGCTGGAGCCCGATAAGGGGTTAGAAGAACTCAAAATCTCAAGACAGCTGgacattgatttaaaaattgagCCGAAAGATGATATGAGTGAAAAGAAttctgttgatgatgatgatctcttTATGGACTATGCGGCTGACACCAGCACTGTTGAGGatCCAAAGCCACCATCACCCAAGCAAGAAGAACCGCCAACTAACAAAAAGGACACCAAATCCAATGAGAAACCAATAAAAGAACCAATCACATACGAGGACGCAGATGACGATAGAGACAGCGATTGGTCAGCTTCGTCGTCGGATTCAGATAAGCCACTCAAGAAGAGGGCCAAGAAAAAAACTAAGACTAAAGCTAATGGCGCGAAAAAGAGAAAGGCGGTTAAGGAAAAAGTTGGGAAGAAAAAGACAGGTACAAAAAAGCAAAAAGTACCAAAAAAACCGGCACTCGAAAAGAAACACAACCCCGACCGTGATCTCGACTGCATGTCCGAAGAAAACCTTCTCACAATCGTCCAGTATTCCTACGTCTGTCCTTTCAAGAACAGAAGGAATAATTACTACTGTTTTTATTGCAAAGACTATTATCCAAAACCGGAGGATTTGAGAGAACATACCGTCTCACACGATACCAAACCATTCCAACTCCTTATGGGCTACAAAAAAATGCCTAAACTCGACATAACTAGAATAGATTGTCGCTTATGCTCAATGAAGATTGATGACTTGAATATATTCAAGCAACATATAGATAATGTTCACGGAAAGAAGATATACTTCGAAGCGCCGGATAAAATGCTATTGTTCCGTTTAACATGGAACGATTTGGTTTGCGTTGTTTGCAGCGATGTTTTCGAAGACTTTAACACACTTAGCACTCATATGATCGACACTCACTTTAGTAATTTTACTTGTGATGTATGTGGCATGTGTTTCTTAGAGAAGCCGAGGTTAGATGCCCATTTGAAGCGGCATAAGGACGATGAAAGACATACCTGTGAAATATGCGGGAAGGTTTTCAAATCGAACCATTATAAGGACATGCATGTGGATATAGTTCATAAGAGGAAAGCTATTATTCGGTGTCCAAAATGTGATGAATGTTTTATGTCTTATGCGTTGAAGAATAAACATTTGACTGAAGCTCATGGTCAGAAGAGAACGTACCCTTGTAATCTTTGCGATAAAGTTTACAATAGACAGAAGACATTGACAGAACACCAAAGGCGCAACCATCAGAAGGTTATGAAGCATCAATGCGAGTATTGCGACCAGAGATTCTATCTACCGTCCAGATTGAAAGAGCACATGGCAACGCACACAGGAGAAAGAAATTTCAGATGCGAACATTGTGACAAAAGCTATCCCCGTTTGAAATCCCTACAGTATCATATAAGGACTCATACTAATGACAGGAGGTTTAGGTGTCATATATGCGGGCAGGGTTTTATACAGAATCCTAGTTTGAAAGCGCATATAAAGAGCCATCATCCGGAATGCGAGATTGACTTTTTGTATGAGAATAATTTTAGGAAGTTTCAATGA
- Protein Sequence
- MDGVACLLDDVAVAGATLEQHNQRLRQVMQKLTDLGFRLNSKKCVFAANSITFLGHMIDGEGLHPAPAKVKEIQEKSAPTNKETLRAFLGLYNFYQKFLPDRATLLEPLYRLLEAKTPWKWGEVEQKVFEKAKLLLSSDLTLVGYDLNRELLLICDSSEYGVGAIIAHVMDDGTERPIMMASRTLQTHERRYGQIDKEALAIMFGLLKFHEFLVGRRFCIVTDHKPLVGLFNPAKPIPDQISPRMLRWSLKLACYEYTIKHRPGKYIGNADALSRWTAPSMGTVAEERLKEVLLLEEQPAGWNLSAERIATETKNDSLLQKVLFHVLHGWPNKITDPALQPFWTRREALSHTKDCLLWSNRVIVPAKLQEQVLKILHAPHAGIVQTKAYARGYVWWVQMDNQIEQMVASCEQCQLVRNSPPRDPQTWVMSEKPWQRVHIDFAGPFHGKTFFVLIDSYSKWMEAEIVNTMSSGAVIMVMRRIFASQGLPDVVVSDNGRAFTSEDFNSFLQKNGIRHLLSPPYHPATNGQIERAIQTFKNKIRKMETLNLPCSEMLSKVLYYMRTVPNSSTNKTPAEMLNGRKYRTAMSILHPESSPNRGEIQLEAAAQRAPARGFVVDQPVLIHMYGAGQKWRRATIEMVEGPSSYRVRTEDGELHRRHADQILARTVRTESRLTDNQDGLDSDSQPPDELVEPPIDIPPPERLVYKMSVTITKNNGPIIDPALCRCCRAIKKCRILTAEYTWQEEKEVYADMVMDCFGILLSHVDDSEKDSGVCATCVVRLRDASAFRRQVLQCEELFLNAKLEPDKGLEELKISRQLDIDLKIEPKDDMSEKNSVDDDDLFMDYAADTSTVEDPKPPSPKQEEPPTNKKDTKSNEKPIKEPITYEDADDDRDSDWSASSSDSDKPLKKRAKKKTKTKANGAKKRKAVKEKVGKKKTGTKKQKVPKKPALEKKHNPDRDLDCMSEENLLTIVQYSYVCPFKNRRNNYYCFYCKDYYPKPEDLREHTVSHDTKPFQLLMGYKKMPKLDITRIDCRLCSMKIDDLNIFKQHIDNVHGKKIYFEAPDKMLLFRLTWNDLVCVVCSDVFEDFNTLSTHMIDTHFSNFTCDVCGMCFLEKPRLDAHLKRHKDDERHTCEICGKVFKSNHYKDMHVDIVHKRKAIIRCPKCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVMKHQCEYCDQRFYLPSRLKEHMATHTGERNFRCEHCDKSYPRLKSLQYHIRTHTNDRRFRCHICGQGFIQNPSLKAHIKSHHPECEIDFLYENNFRKFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -