Hvit011848.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638093.1:9827467-9830580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.73 57 5.3 3.5 1 23 252 275 252 275 0.94 2 15 0.068 5.3 8.6 2.0 1 23 280 303 280 303 0.96 3 15 0.21 16 7.0 2.5 3 23 335 356 333 356 0.97 4 15 0.0039 0.3 12.5 0.4 2 23 417 439 416 439 0.96 5 15 0.00034 0.026 15.8 0.8 1 23 445 468 445 468 0.95 6 15 0.018 1.4 10.4 0.3 2 20 472 490 471 492 0.92 7 15 0.0036 0.28 12.6 0.2 1 23 500 523 500 523 0.98 8 15 0.0006 0.047 15.0 0.2 1 23 528 551 528 551 0.95 9 15 0.0022 0.17 13.3 0.2 2 23 564 585 563 585 0.96 10 15 0.004 0.31 12.4 5.6 1 23 591 613 591 613 0.98 11 15 6.2e-05 0.0048 18.1 1.5 3 23 648 668 647 668 0.97 12 15 0.0048 0.37 12.2 0.3 2 23 710 732 709 732 0.96 13 15 3.3e-05 0.0026 19.0 3.6 1 23 738 760 738 760 0.98 14 15 0.00061 0.048 15.0 6.7 2 23 767 788 766 788 0.96 15 15 0.034 2.6 9.5 1.6 1 23 794 817 794 817 0.96
Sequence Information
- Coding Sequence
- ATGGATCACAACAACACCCAGACAGAGCTGATGGCCGAATGGCTGAAATCTCGAATAAATACCATTTTGCGCTCACAACAGTACTGTGCACTGTGCCTCAACTCTGCTGGAGAATTCATGGCTTTAAGTATGGAGTTCATGGTAAATAAAGAAGTGTCTTCGAAGCCACTACGAGATGTTGTCAATTATGTGTTTAATTTTGATatagaCAACTATATTTACAGTGATCACATATGCGAGCAATGCACTGAAAAAACTATACAAGCTTATATATTCatcacaaacacaaaaaaagcATATAACATTCTGAATAGCTGTCTAGAAGACCTGAATTCAAAGGTTAATGACCTTAACAATACTGTTGATGACACAAATTATCAAGACACTAATGTCATGATTGTTGTTGAATATGATAGagaaattaataatcaaatcAATGAGTTAATCTCGGGAATTAGCCCTATATTGACTGACAAACCAGTTGTACTAGAAAAGAAAGACAACCCAAGCTACATTCAACCAGCCAAACCAACACAAACTGTAAAAACTGTAGACAATAAAGAAAATGAAGGACCAGTTATCATTATCAAACCTACTTGGAGAGTAGTAAAATATCctagaattaaagaaaaaaataatgaaaagagAAATTTAGAGAACGTTTCAACTCCAAACATAACGTTGAAAGAAGGCAAAATTGTTATCGAGCCATTGATAACAAACGACATACCTGCAACTCCACGGTTCAACACATACCATTGTAATTCTTGTCCGGATATATTTACATCACATAGATCTCTAAAAGAGCATGAAAAAGCGAAACATAACACTGTTATCTTCAAATGCAGGTTCTGTGcgaaaatatataatacacaGCAATATCTAGATGTGCACTATCTGTCAAAGCATGCTAGTTCTAGGTGCAGATTCTGCCAAGAACTGCTTAAATCAGACAAACTGAACGAGCACTTAAAAGAGAAGCATCCGAAAAGTATCTTTGGATGCTCCGAATGCGATTTAACCTACTACACATTCGAGAAGTTAGATACACATTATAAATCCTGTCACTCCAGTaacatagtaaaaaataatcagcAGTGCATTATGTGCTTGAAAAATTTAAGTGAAAAAGAAGTTGGAAGTCATAAATGCAAGTTTTCATGCCTAGAATGTATTAAAATGCCTTGCATTCATTATAACTACCTGGTTTCATATAGAGACCAGGTCTTAAACCATTCAACGATCATACGCTGTTTAGACTGTGATTTCACAACAAAACGAAAGGAGCAGTTAATAGGACATGTTAACAGAGAACATTTGGACTACCATCCCTTCATATGCGGCGAGTGCGGAACCCAGTTTTACACGAAACTTTCACTTCGGACGCATATCATGCAATTCCATCAGGATGTAAAGTGCCAATACTGTGATACCCAGTTTACTAATTCGAAAATTCTTCAAAACCACAGAGAAATTTGCAAAACTGTTGCCCGTCAGTACGAATGCGCTAAATGTATGGCCTCCTTTGATACAGCCCAAGAACTACAGAAGCATGTTCAAACCAACCATAGTGTGTTGGTGTTCCCATGCTCGCTGTGCAACAAGGAATTCCCTAGTGAGATTAATTTGGAGGAACACCATGCTAGAGTACACAATGGTATCCAATACAAGAAAAGGAGAAAGATAATTGAATGCACAATATGTGatataacatttaaaaacataaaagaaaTGATGGAGCATGAAAAATCTCACTCACCAACCGAAGAGTATCCATGCAAAGTCTGCTCAAAGACCTGTACAAGTCTCAAAAAGCTCTACCGTCACAAACAGAGGCATTACTCTCAAAGAAAGAAATGTGTCCGCTGCATGAAAAGCGTTGCAGCATCTTATTACATCCAGCACAAGGCTCTGTGCTCAAAGAAGAACGCTGAAAACATATGTGAAGTCTGTAGCAAGTCGTTCCACCAGCGATCCGCCCTGAAGGCTCATCAGCAACTTCACACTGATCCAGAGCCATGCATACATTGCGGGAAGATGATCAAACCTCTATCAATGCATAGGCATCTTGAGTTAAAACACGCAGCTTACGTCATCAATAACGAAAACGCTAAACCGCCATTCTTAAAATGCGACGACTGTGGCTACATTGCTAGAAAAAAGACAGATTTTGAGAACCATGTTAACAGAATACACTTGAAAATTAAACCTTATTGCTGTGATGTTTGTGGTAAAAAGTTCTGTGGCAAATCCAGACTAGCAGAGCACATGCGAATTCACTCGAACTCTAACAACTGCTTCTGTTCATTCTGTGGTAAGAAATTCGCGAACAAAGTATGCCTCAAGATGCATATCAGAAGGCATACAGGCGAAAACCCTTACGAATGTAACATATGCTTAGAGAAATTCAGATCCTCCAGCATTATGAAGACTCATCGCTTAAAAAAACATCAGGATAAGACTATTCAGTGTCCACTATGTAACTCTATGTACCATTTAGTCGCAGAAATGAGGTTCCATGTTAAAAAGGTCCATTGGAAATCAGCAGAACCTTTTGATTATAGAAAATGTGTGTCTGAAGAGTTCTACCATCTGTTTCAAGATCGGAGACTGCAGAAATTGGGTGAGGATTCATTAGTTTGTAATGATAATGAGGAATATAATGATTGTTTGTAG
- Protein Sequence
- MDHNNTQTELMAEWLKSRINTILRSQQYCALCLNSAGEFMALSMEFMVNKEVSSKPLRDVVNYVFNFDIDNYIYSDHICEQCTEKTIQAYIFITNTKKAYNILNSCLEDLNSKVNDLNNTVDDTNYQDTNVMIVVEYDREINNQINELISGISPILTDKPVVLEKKDNPSYIQPAKPTQTVKTVDNKENEGPVIIIKPTWRVVKYPRIKEKNNEKRNLENVSTPNITLKEGKIVIEPLITNDIPATPRFNTYHCNSCPDIFTSHRSLKEHEKAKHNTVIFKCRFCAKIYNTQQYLDVHYLSKHASSRCRFCQELLKSDKLNEHLKEKHPKSIFGCSECDLTYYTFEKLDTHYKSCHSSNIVKNNQQCIMCLKNLSEKEVGSHKCKFSCLECIKMPCIHYNYLVSYRDQVLNHSTIIRCLDCDFTTKRKEQLIGHVNREHLDYHPFICGECGTQFYTKLSLRTHIMQFHQDVKCQYCDTQFTNSKILQNHREICKTVARQYECAKCMASFDTAQELQKHVQTNHSVLVFPCSLCNKEFPSEINLEEHHARVHNGIQYKKRRKIIECTICDITFKNIKEMMEHEKSHSPTEEYPCKVCSKTCTSLKKLYRHKQRHYSQRKKCVRCMKSVAASYYIQHKALCSKKNAENICEVCSKSFHQRSALKAHQQLHTDPEPCIHCGKMIKPLSMHRHLELKHAAYVINNENAKPPFLKCDDCGYIARKKTDFENHVNRIHLKIKPYCCDVCGKKFCGKSRLAEHMRIHSNSNNCFCSFCGKKFANKVCLKMHIRRHTGENPYECNICLEKFRSSSIMKTHRLKKHQDKTIQCPLCNSMYHLVAEMRFHVKKVHWKSAEPFDYRKCVSEEFYHLFQDRRLQKLGEDSLVCNDNEEYNDCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -