Hvit029151.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638108.1:6615932-6624135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0037 0.29 12.5 1.7 1 23 100 123 100 123 0.93 2 17 2.8 2.2e+02 3.5 4.6 3 23 194 214 192 214 0.93 3 17 0.26 20 6.7 0.2 1 23 218 241 218 241 0.91 4 17 0.0023 0.18 13.2 1.0 1 23 246 269 246 269 0.93 5 17 3e-05 0.0023 19.1 1.4 1 23 304 327 304 327 0.95 6 17 0.00013 0.01 17.1 1.8 1 23 333 355 333 355 0.97 7 17 4 3.1e+02 3.0 1.0 1 10 361 370 361 371 0.92 8 17 1.6 1.3e+02 4.2 5.0 1 23 474 497 474 497 0.94 9 17 0.75 59 5.3 0.1 2 23 524 549 523 549 0.87 10 17 1.5 1.1e+02 4.3 6.5 1 23 571 593 571 593 0.98 11 17 0.35 28 6.3 0.2 1 23 597 620 597 620 0.88 12 17 0.00016 0.012 16.8 1.2 1 23 626 648 626 648 0.98 13 17 0.00023 0.018 16.3 2.0 1 23 654 677 654 677 0.96 14 17 0.021 1.7 10.1 0.2 2 23 685 707 684 707 0.96 15 17 3.5e-05 0.0027 18.9 2.9 1 23 713 735 713 735 0.97 16 17 4e-07 3.1e-05 25.0 0.5 2 23 742 763 741 763 0.97 17 17 0.0071 0.56 11.6 3.8 1 23 769 792 769 792 0.98
Sequence Information
- Coding Sequence
- ATGAAATTTCAGTCTGAGACAGAAAGAAACATAACTTTTGGATCCAACCTGACCGTGACAGAAACTTCAGCCAAACTTCAGCCTGACACAGgTGGTCAAGAATCCGTTGATGATGAGCAAGAGGCAGAAGATGTGAATGACCCTGAAGAGTTGTGTGGTCAAGAATCCGtgaatgataagcctcttaagCCGGATCATGTGAATGACCCTGACGAGTTGCAAAAACAAAGGCACAATATTCggcagatattattttttactaatgcTACACCGATAGCACGACATAGCCGCTTGGGCTACAGTTGTTGTTTCTGCTCGAGAAGCTTCCAGGACCCCGCGGAATTAAAAGTACATACCCTCGCATTCCATGACGATAATGTTAAGGCTACCTTCATGGGTAAATCAAGTCTCTATGCGTTCCTAGTCAAACTTGACGTTACTGATCTGGAATGTTTCATATGCGACGATAGCATCAACTTTACAGAAATCGGAGAACACCTCAGTACCCACGACAAGTTTTTGCACGGCGATataaaaaactacattttacCGTTCATATTTGACAGCGAGGACCTAAATTGCCTGTTCTGCTGCAAAACATATAAAAGCTTCAAAACGTTACAGATACATATGTACCAGCATTACGATAATTACGCGTGCAGCATTTGCTCAGTTGGCTTCGTGAACCAGAATATGGTTTACAACCATTTCTTGAACTCTCATAAAATTGGATCTTTTTCGTGCGCTTATTGCAATGAGAGCTTCGAAATGCGCAACCAGCTGAAATCTCACGAGTATCGGATCCACGCGATAAAGAAACACAACTGCGGGTTCTGCGATGAGCAGTTCTTAACCTACGATATGAAGAGGCAGCATGAGATCAAAATTCACGAGGTTGAAACTCCAGGACACGACTGCAGTGCCTGTCCGAAAAGTTTCTCGAAGCAGTCTCAGTTGGAAATTCACTTAAAGAAGGATCATCTTTTGAAAACCCGCTACAATTGCACCGTCTGTAATAAAGCCTTCTTCTTCCAATTTCAGCTTACCTCTCACATGGTCAGTCACACGAAGGCCAAAGAGTTCGAGTGCGAAGTGTGTCATAAGCGATACGgTATCGTCATCAGTGACGTGAAACCCATAAAAGTGGAAATTGATTGGGATTTAGAAAACGATTTGGAACTTAATGAAATAAAGGAAGAGAAAATGGCAACGAATGCCAGCGATAAAAAGAAAAGAGCAAATACAGCTAGAAAAGCTAATCGGAATAAGAAATTAGAGAATAAAGAGTTTCAACCACTCAAAATTAAGCCACCGCCTAAAGCTGAGCTTTTAGACGTTGATAAACACCGGTATAACGTGCGAGCTATCTTACAATATTCCAATGCGACCCCGATACGCGCTCACTACGCTGGTAATGGCTACGCGTGCTGTTTCTGCAAACAATACTTCCACAAAGCGGCTGAACTCAAAACCCACACATTACAAATGCACGATGACCAAACCAAAAGAAAATACATGCAAAAAGCCTTCCTATTCAAGCTGTTCGTAAAGCTTGATATCACATGTCTTAGATGCAGCATCTGCGTTAATGCTACCATCACTTTTGAGACCCTCGACGAGTTAATACAGCATCTAAACAATGCACACAACAAAGGTATTCATACAGAcatcaaaaatcaaataatgtGTTTCAAATTTGACGAAGACGCGTTTCGGTGTTTCATGTGCTCTGTCGAGTATCACAGTTTTAAGAACTTGCAGGAGCATACACATACGCATTATAGGAACTTTATCTGCAACGTTTGTGATGCTGGATTCATTAATAGATTGAAGCTTTACGGGCATGTTTATAACAAACATAAAGGCGAAGGGTCTCACAAATGTGCTACCTGTGAGAAAGTTTTCGACACCCCAATCAAGCTAAAGACGCATGAACGAATACACACCGGCTCTGTTCTTTACAAATGCCACGAATGCGGTGAAAAGTTTCCCAAGAAAAAGGAGAAGAGGGATCATATGATAAATGTGCATGGTGCTGAATTCGCGAGAATCAAATGCACAGCTTGCGAGAAGATGTTTTTAAGCAAAGCGTCGCTTAGCGTTCATATAAACAGAGACCATTTGATGGACAGACGCCATCAATGCGAGTTATGCGATAAAACATTTTTCACGTCTTCCTTTCTGCGTGACCATATGGTTTCACACTCTAGGGTTAGGGAAATACAATGTGATGAGTGTCCGAAAACGTTTGCTAGGAAGAAAGCTCTCAGAGAACACATGAAATCACATACTGGCGATCGCAGGTTCAAATGCACCTACTGCGATATGGCGTTCTTGCAGAAATGCAGCTTGAAGGGTCATTTGCGAAGCAGACATGATGCCGAACTTCAATGA
- Protein Sequence
- MKFQSETERNITFGSNLTVTETSAKLQPDTGGQESVDDEQEAEDVNDPEELCGQESVNDKPLKPDHVNDPDELQKQRHNIRQILFFTNATPIARHSRLGYSCCFCSRSFQDPAELKVHTLAFHDDNVKATFMGKSSLYAFLVKLDVTDLECFICDDSINFTEIGEHLSTHDKFLHGDIKNYILPFIFDSEDLNCLFCCKTYKSFKTLQIHMYQHYDNYACSICSVGFVNQNMVYNHFLNSHKIGSFSCAYCNESFEMRNQLKSHEYRIHAIKKHNCGFCDEQFLTYDMKRQHEIKIHEVETPGHDCSACPKSFSKQSQLEIHLKKDHLLKTRYNCTVCNKAFFFQFQLTSHMVSHTKAKEFECEVCHKRYGIVISDVKPIKVEIDWDLENDLELNEIKEEKMATNASDKKKRANTARKANRNKKLENKEFQPLKIKPPPKAELLDVDKHRYNVRAILQYSNATPIRAHYAGNGYACCFCKQYFHKAAELKTHTLQMHDDQTKRKYMQKAFLFKLFVKLDITCLRCSICVNATITFETLDELIQHLNNAHNKGIHTDIKNQIMCFKFDEDAFRCFMCSVEYHSFKNLQEHTHTHYRNFICNVCDAGFINRLKLYGHVYNKHKGEGSHKCATCEKVFDTPIKLKTHERIHTGSVLYKCHECGEKFPKKKEKRDHMINVHGAEFARIKCTACEKMFLSKASLSVHINRDHLMDRRHQCELCDKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTYCDMAFLQKCSLKGHLRSRHDAELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -