Hvit029149.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638108.1:6606172-6611467[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.65 51 5.5 5.0 1 23 110 133 110 133 0.94 2 15 0.22 17 6.9 0.0 3 23 161 182 159 182 0.94 3 15 0.022 1.7 10.1 2.7 2 23 205 226 204 226 0.98 4 15 0.0036 0.28 12.6 0.1 1 22 230 251 230 253 0.89 5 15 0.13 10 7.7 1.1 1 14 258 271 258 281 0.88 6 15 0.069 5.4 8.5 0.8 1 23 448 471 448 471 0.94 7 15 1.3 1e+02 4.5 0.1 2 23 498 520 497 520 0.92 8 15 0.023 1.8 10.0 2.5 1 23 542 564 542 564 0.99 9 15 0.0025 0.19 13.1 0.2 1 23 568 590 568 590 0.95 10 15 1.5e-05 0.0012 20.0 0.4 1 23 595 618 595 618 0.97 11 15 0.24 19 6.8 5.7 1 23 624 647 624 647 0.96 12 15 0.0064 0.5 11.8 0.6 2 23 655 677 654 677 0.95 13 15 0.00088 0.069 14.5 2.7 1 23 683 705 683 705 0.97 14 15 1.5e-06 0.00011 23.2 3.6 1 23 711 733 711 733 0.99 15 15 0.0025 0.2 13.1 4.6 1 23 739 762 739 762 0.98
Sequence Information
- Coding Sequence
- ATGTTCGGCGCGTTCGGTCCCATGTTCTCGAACTCGTGGATGTGTATCCACGTCGGAGATCacaaaccaataaaaaaagaactagATGTTTCTTGGGAAGTAACTATAGTTAAAGTTGAAGACGCATCAAATGATAATAAGTCTCTAACAAAAGCTAAAAAGAAGCTAACTCAAAAACCTGATGAGGTCTTAATTAAAAAGACTAAAGTAAAACCGACGGAACACGCCCAAGAGGCTTCAGAGCTAGATAAACACAGATATAACGTACGTACTCTATTGAAGTTCTCAAATGCTACCCCGATCCGTACACACTCTATATCAAGTGGATACGTCTGTTGCTTCTGCAAAGCTCATTACTCGAAAGCCGCAGAACTCAAAACGCACACTATACATGAACATAACGATGATACAAAGAGCAAATTCATGCAAGGAACAACTCTGTTTACATTCATCGTTAAACTTGACATTACTTCGCTAGCTTGTAACATTTGCAGCATTCCGTTAGACAACCTGGAGGAACTTTTCGATCATCTCAACAACACTCACGATAAAGGACTACATAAGGATATAAAAAGCTACATAGCTTGCTTTAAGCTTGACGATGAAGCGATGAAGTGTCATATTTGCTCGGCGGAATACAAAAGCTTCAAGTTTCTCCTAGAGCACATGAATAAGCATTCTACTAATTTTGTCTGCGACGAGTGTGGGGCGGGTTTTATTAATTTGGGACAATTGAGATACCATTCGGATAATATGCATACGATTGGCGTGTACAAATGTGATACGTGTGATAAAATATTTCCATCTGCGAAAAAGAAGTATTTCCATGAACGTGCTTCTCATTTTCAATCGCCGAACAAGAGAGGGTCTTTACCATTTTGTGCTCTAACTAACATTCAATGCGGTATCAACATTGATGATGACatgtcttttattttctttgtaggTCTCGTCTTCAAAGACTACAACCCAATTAAAAAGGAGATAAAAGAATCGGGGGAAACTGAAGTTATAATCCCAAAAGCTGAACACATATTTGTCGAAGTAACACCCACATCTATACTAGCAAGAGAACTACTTAAGAAGACAAAACCTCGGAAAGCAGTAGACTCCTCGGTTCAGAAAACAAAACCATTACAAATTCATGCGACTACGATAAAAAGTATACAAATAAAGCCTCCATCTGAATACAGTACCTTTCAACAAGGAATTAAAATAGAACCTCCTTTAGAAAACCCCCCTGAGCAGTTATACGAGATCGAGAAACAGCGACATAACGTTCGCTCTGTATTACTTTACTCAAACGCGACACCCATCAGAAAGCATTACGTTGGTACCGGCTATAGCTGCTGCTTCTGCAAAGCTAGTTTCCCCATCGCAGCAGACCTCAAAACGCACACCATTCAAGACCACGATGACGacacaaaaaacaaattcatGAAAAGAATCCGTCTGTATTCTTACATCGTAAAATTGGATATAACCGCACTCTGCTGCAAAATTTGTAGCGCACCCGTTGACGATATCGAACAACTAATAGAACACCTTAACGACGCACATGATAAAGGACTTCATACGGACATCAAAAGCCACTTTGCTTGCTTCAAATTCTACGGAGATACTTTTAAGTGTCATATTTGTATAGCAGAGTATAGGAGCTTCAAGCTTCTACAGGAGCATATGAACAAACATTGCATGAACTTTATCTGCGATGAATGTGGAACCGGTTGCATCAATAGAGGTCAGCTAAAATTGCATTCCGCTGTCCACCAATCCGGCTCCTATAAATGTGTTATTTGTGACAAAGTTTACAAATCCATCGTCAATCTGCAGTCTCATACACGCCAAGCGCACTCCAGAATCCCGATCCACAAGTGCCACTTGTGCGAAGGAAGATTCAAAACAAAGAACTCAAAGAGAACTCATTTAAAAGAGGCTCATGGGATAGTTTTCGCTGATTTGGAATGTGATTCTTGCAGCCGGACCTTTAAAGATAATCTTGGACTTTGGACGCATAAGAATAGAGATCATTTGATGGAAAGGCGGTATCAGTGCGAGCTGTGTCATCGCAAATTCTTTAAAGCTTCTATGTTGAAGGAGCATGAAGTAACGCATACTGGGTCGAGGGAGTTCAAATGCGAAGTTTGCTCCAAATCGTATTCTAGAAAGCATGGGCTTAGAGAACACATGCGTTCACACACTGGAGATCGCCGTTTCAAATGTACTTATTGCGGCATGACGTTTTTACAAAAGTGCAGCTTAAAAGGCCACTTGCGAAGTCGACACGATGCGGAATTACAATAA
- Protein Sequence
- MFGAFGPMFSNSWMCIHVGDHKPIKKELDVSWEVTIVKVEDASNDNKSLTKAKKKLTQKPDEVLIKKTKVKPTEHAQEASELDKHRYNVRTLLKFSNATPIRTHSISSGYVCCFCKAHYSKAAELKTHTIHEHNDDTKSKFMQGTTLFTFIVKLDITSLACNICSIPLDNLEELFDHLNNTHDKGLHKDIKSYIACFKLDDEAMKCHICSAEYKSFKFLLEHMNKHSTNFVCDECGAGFINLGQLRYHSDNMHTIGVYKCDTCDKIFPSAKKKYFHERASHFQSPNKRGSLPFCALTNIQCGINIDDDMSFIFFVGLVFKDYNPIKKEIKESGETEVIIPKAEHIFVEVTPTSILARELLKKTKPRKAVDSSVQKTKPLQIHATTIKSIQIKPPSEYSTFQQGIKIEPPLENPPEQLYEIEKQRHNVRSVLLYSNATPIRKHYVGTGYSCCFCKASFPIAADLKTHTIQDHDDDTKNKFMKRIRLYSYIVKLDITALCCKICSAPVDDIEQLIEHLNDAHDKGLHTDIKSHFACFKFYGDTFKCHICIAEYRSFKLLQEHMNKHCMNFICDECGTGCINRGQLKLHSAVHQSGSYKCVICDKVYKSIVNLQSHTRQAHSRIPIHKCHLCEGRFKTKNSKRTHLKEAHGIVFADLECDSCSRTFKDNLGLWTHKNRDHLMERRYQCELCHRKFFKASMLKEHEVTHTGSREFKCEVCSKSYSRKHGLREHMRSHTGDRRFKCTYCGMTFLQKCSLKGHLRSRHDAELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -