Hvit011810.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638093.1:8790614-8796045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.011 0.88 11.0 2.2 3 23 157 178 155 178 0.96 2 16 4.3e-05 0.0034 18.6 1.8 1 23 187 210 187 210 0.96 3 16 0.0063 0.49 11.8 0.5 2 23 223 245 223 245 0.97 4 16 0.00052 0.041 15.2 1.1 3 23 256 277 254 277 0.96 5 16 0.0013 0.098 14.0 0.7 2 23 290 312 289 312 0.96 6 16 1.5e-06 0.00012 23.2 0.9 1 23 339 362 339 362 0.97 7 16 7.3e-05 0.0057 17.9 0.9 2 23 372 394 371 394 0.96 8 16 0.87 68 5.1 1.1 3 20 400 417 398 419 0.91 9 16 0.0013 0.1 13.9 0.8 2 20 424 442 423 446 0.95 10 16 0.00034 0.026 15.8 0.1 2 23 455 477 454 477 0.94 11 16 0.0002 0.016 16.5 3.9 1 23 482 505 482 505 0.96 12 16 0.0098 0.77 11.2 4.8 1 23 516 539 516 539 0.91 13 16 0.22 17 7.0 1.7 1 23 558 581 558 582 0.92 14 16 0.038 3 9.3 3.2 2 23 614 635 613 635 0.97 15 16 0.005 0.39 12.1 0.2 1 23 701 723 701 723 0.97 16 16 0.23 18 6.9 2.0 1 23 729 752 729 752 0.96
Sequence Information
- Coding Sequence
- ATGTCTCTTGTACCCAAAACCGAAATAAAAGAGGAAAATGATGACCGCAAAGACCCGACCTCCTTTCTACCTGAGGAAGACATGAGCTATGAGATcccgaaaaagaagaagaagaaaaagaagaagaagcagcaAGAGGACCCCTTCAAGGACTTGGATGATACAGGGACGCGAGAACCCGATGTAACCGCTTTAGATCCGGATATAGGCAGTTTGGATCCCGAAGTCACTATCAAGGTTGAAGATATTGAGGTGGATTTGAATATTGATGATTACAACAACGATGACGGCCTAGTCGAGGAAAGCTACACCGAGAACTGCCATTTAGAACCAATCGTCAAAATCGAGGAGTCAAACCGAGACGCTGTCCTCCTCACCTTCCAAAACATTATCAGCGACAACCTCATATCGGAAAAGCTTCTTAAAAATGAGAAAATTAAGATAGAACGCCCTGCAGCTAACTTATTCTGCCAAGTGTGCCATCTAGTCTTCAAAACAGTGAAATCTTTGGACACGCACCGTAAAAGAGCTCACAAAAGCTTCAGACAGTCTTTTTCACATATATGTGATGACTGCGGCATGTCTTATGAGCATAAAAATAGTCTAGTCGCTCATATAAGAAGGAAACATGGTCCAGACGCGACTAAAGATGATATGTTAGAGCGTACCTGTGATATTTGCGCGCTAGTTTTCAAAGGGATATCTAGGCTAAGGATGCATATGCGGAGGAAACATGGGAGCCACGAGGACACCTTCAAACTCGCTTGCGAATACTGCGGCTTAACATATGATAAACAGTGCAGCTTGCTTGTTCATATACGCAGAAAACACACACATAAACAGAAATCTAAGGCTAATCTTTGGTTGACTTGCCCATTCTGTGCTAAGATTTTTAACAAAAGAGAAACTTATGCAAGACATATACAGAGAAATCATCGGGTAAACGATGATGAAACGAAACAGAAAGAGTTAGAGAAGTTTAAGCAAATGTATATGAATGAGAAGACTGGGGAATTTAATTGCAAGGATTGTCCAGCGAGCTTCTCAACTCCCAGCTATCTTAAATGGCACTTGAAGAGAAAGCACAATGCCGTTATACCAGATTTTAGACTGAATTGTAAGATTTGCAGCCTCTCCTATGCTAACTCCGAGAGCTTAAAGCGGCATGTACGAAGAAAACATGAAAGAGGGACCTTCTGTTATGAGTGTAACAGACAGTATCCAGATAGAGAAACATTCTTGAACCATTCTCACACTAAAGATGTTAAAGAATGCAATGTCTGTGGGCTGATTTTTGCAAATCAAGGTGGGTTATCTAAACATATGACTTGTACGCACAAGATTGATGGTCCGAAAACAATAGTCTGTCCGGCGTGCAACCAAGCATTTGTTAATAAGAGGCAGCTGAAAGCCCATTACAATCAAGTGCATTTAAAACTGAGCTACCCCTGTAAACATTGTTCAAAAGTCTTCAAAAATAGGGATGTTTATAAACGCCATGTGAACAACAAACATTTGAACAACGCAACAGAGAATACAGAGAgccaccaatgtgataaatgcCCGGAGAAATTCAAAGATGAATTCGAATTATGCAAGCATAATAACTTTGTACATGGTGAGGTACCCACTGTTGTCATAAAAAAGGAAGACGAAGATATACGGAACATTTTCAAATGCACGAAATGTTCAGATGAGTATGAAACTTGGGAATTATTACGAGTCCATTTCGAACAGTCGCATCATATGACTCAGAAAGTACAATGTCAGGTATGCGGTGATCTGATGAGCCGAGGAGAATTAATCAAACACATCAAAGTTCACGATGAAGTCGACCTTGAATGCCAGCACTGCGAATTCAAAAGCAAGAACCGAGTTAGTATGACCCAGCATATGTTAAGACACAAGAATGCGTTCACATTACACTGCGACTACCCTAACTGTAGATATAAATCATTCTATGAGCATGCAATGGTGAAACATAAGAAGCGGCATCAAGAATTAGGTGTTAAATTACAGTGTGCAAGTTGTCCATTTCAGACAATGAACAAATACATCTTAAGGTACCATGAAGAAGCCCATGAGACAGGGAAGAAGCGATACCAATGCGATAAGTGTGATTATGCGACTATACTACCCGCAAATTTAGTTcaacataaatataaacattCCACGGAAAAGAAGTTTAAGTGTGAAGTATGTCCGTTCGCGACTAAGTATAATACTTCGTTGCGGTTTCATGTTAAGAAAAAGCACTGTGATCTACCTACTATGAGGTAG
- Protein Sequence
- MSLVPKTEIKEENDDRKDPTSFLPEEDMSYEIPKKKKKKKKKKQQEDPFKDLDDTGTREPDVTALDPDIGSLDPEVTIKVEDIEVDLNIDDYNNDDGLVEESYTENCHLEPIVKIEESNRDAVLLTFQNIISDNLISEKLLKNEKIKIERPAANLFCQVCHLVFKTVKSLDTHRKRAHKSFRQSFSHICDDCGMSYEHKNSLVAHIRRKHGPDATKDDMLERTCDICALVFKGISRLRMHMRRKHGSHEDTFKLACEYCGLTYDKQCSLLVHIRRKHTHKQKSKANLWLTCPFCAKIFNKRETYARHIQRNHRVNDDETKQKELEKFKQMYMNEKTGEFNCKDCPASFSTPSYLKWHLKRKHNAVIPDFRLNCKICSLSYANSESLKRHVRRKHERGTFCYECNRQYPDRETFLNHSHTKDVKECNVCGLIFANQGGLSKHMTCTHKIDGPKTIVCPACNQAFVNKRQLKAHYNQVHLKLSYPCKHCSKVFKNRDVYKRHVNNKHLNNATENTESHQCDKCPEKFKDEFELCKHNNFVHGEVPTVVIKKEDEDIRNIFKCTKCSDEYETWELLRVHFEQSHHMTQKVQCQVCGDLMSRGELIKHIKVHDEVDLECQHCEFKSKNRVSMTQHMLRHKNAFTLHCDYPNCRYKSFYEHAMVKHKKRHQELGVKLQCASCPFQTMNKYILRYHEEAHETGKKRYQCDKCDYATILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPTMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -