Hvit015616.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- Znf711
- Assembly
- GCA_951804965.1
- Location
- OX638095.1:17742414-17755221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0044 0.34 12.3 0.7 1 23 249 271 249 271 0.98 2 11 0.0012 0.095 14.1 4.5 1 23 278 300 278 300 0.98 3 11 0.65 51 5.5 1.4 1 23 304 327 304 327 0.95 4 11 5.5e-05 0.0043 18.3 3.6 1 23 334 357 334 357 0.93 5 11 1.9e-05 0.0015 19.7 1.6 2 23 364 386 364 386 0.96 6 11 0.07 5.5 8.5 0.0 1 21 394 414 394 416 0.89 7 11 0.001 0.079 14.3 0.4 1 22 422 443 422 447 0.92 8 11 0.00011 0.0087 17.3 0.3 3 23 457 478 455 478 0.95 9 11 9.9e-05 0.0078 17.5 0.7 1 23 484 507 484 507 0.96 10 11 9.5e-07 7.4e-05 23.8 0.7 1 23 516 538 516 538 0.99 11 11 0.029 2.3 9.7 0.0 1 23 544 567 544 567 0.96
Sequence Information
- Coding Sequence
- ATGGAGGTTGTGGAAGAGAATAACCGGTGTTGTGTCGGTTGCCTGTGCACCGAAGAAGAGCTGGAGTTGCAGCACTATAGCATCCAATTGGAGCCTCTCAAAGCAATTTTTCAGGTGAATACTCTACTCCTATGTTATTTGTGCAAGAAACTAGCTCAGCATGCAGAACTGTTCGTCCAAAATGTGCAAAGTAACCAGATGTTGCTGGAGAATTTCCATggtgaCCTATCACCATTACAATCAGTGCGTGGTCAAGTCCAAACATCAATAACATTAACACATGCCACACTCCCCCCCATCACCCTAAGTGGAACGGGTGATGAGGAGTCATGCACTGTCATTGTCAGTAACTACCTCAAGATCAAACTTGAACTAAAAGAGGAGGGTTTGGACCATTTGGAGGGGGaatttattgatgatgatgATTTCCAAAACTCTTTTGTAAAAGACGAAGATTACCCAGATAATATACTGAAAGAGGAAGTTGAATCAGACGGCATCGACTTGAAGAGTCTCCGGAAAactttgaagaggaagaaggtCAAGAAAGAAGATGGAAGAGTAAGGAagggaataataaaaataaacaaacactcCGATTCACATCGGCAAATTATTCTAGTTAAAAAATCTCGGTCTGGGTTTGAATCATCCAATGATTATACTCTAATCCGTATAACAGAGAAGCAATGTGTGGAAGAGAGAGAGCAGATGGCGCAAGACAAGACGTACCTCGACAGTTCTTACAAATGTGGAGACTGCCTCAAAGGATTTATGCTGAGGGAAAGCTACGACAGACACATGGAGAAACATAGCTTGAGTAGAGGCAGTTATTGCTGTAAAATTTGCAAATTACGATTCGAGACAGCTCATAACTTGGCAGGACACAAACGAAGTCATACACAGCGCTACAAATGCCTAAAATGCGAGCTTACACGCGTGAGCCTCAAATCTATGAAAGAGCATTTATCTAATAAACACAACCCACATGATATGGAGTACTCATGCTCGAAATGCACTAAGATATTCAAACGGAAAACATCACTACGAAAACACGAATTATACTCGCACTCGTTGAAAGATAGAGCTACGTGTGAGACATGTAACAAGAGTTTTGTAAGCAAGGAGTCTCTGCAGTCACATTTACTTAGAAAGCACCCGTCGGAGGGGGCGAAGCGCTACGTGTGTCAAGAGTGCGGGCTCGCGTTCTTGGCGCCCTCTCAGCTGCGGTACCACGCCGTCGCACATTCCGACCACCGGCCGTTCTACTGCGTCGAATGTGACAAAAGTTTCAAGACCGCCGCCATTTTGGCGCATCACCTGAATACAACCTCGCCTCATATTAACTACTCGGATTTACCGCTGGCGTGTTCAGATTGCGATAAGCGGTTCGCCATAAAGCGGGACCTAGTGCGACACACAAACCGAGTGCATCTCAACCACAAGCCCTACCAGTGCGACAAGTGCGACCGGGCGTACATAAACAACTGGTCGCTGAGAGAACACAAGATGTACAGCCACGACGGTGCTAAGAGGCCGCTGCGGTATCCGTGCTCCATGTGCGACAAAGTATTTGACaGGAACTCAATCTTGAAGTCTCATATGCGCACGCACACGGGGGAACGTCCCTATCAGTGCAGCCGCTGTCCTGCTCAGTTCGCGCAGGGCTCCGCCCTTGGAACTCACGTGAAACTTGTCCACTTGAAGCTAACGAGAGATGGAAGACCAAAGTCTAGTTCACTCAAATGA
- Protein Sequence
- MEVVEENNRCCVGCLCTEEELELQHYSIQLEPLKAIFQVNTLLLCYLCKKLAQHAELFVQNVQSNQMLLENFHGDLSPLQSVRGQVQTSITLTHATLPPITLSGTGDEESCTVIVSNYLKIKLELKEEGLDHLEGEFIDDDDFQNSFVKDEDYPDNILKEEVESDGIDLKSLRKTLKRKKVKKEDGRVRKGIIKINKHSDSHRQIILVKKSRSGFESSNDYTLIRITEKQCVEEREQMAQDKTYLDSSYKCGDCLKGFMLRESYDRHMEKHSLSRGSYCCKICKLRFETAHNLAGHKRSHTQRYKCLKCELTRVSLKSMKEHLSNKHNPHDMEYSCSKCTKIFKRKTSLRKHELYSHSLKDRATCETCNKSFVSKESLQSHLLRKHPSEGAKRYVCQECGLAFLAPSQLRYHAVAHSDHRPFYCVECDKSFKTAAILAHHLNTTSPHINYSDLPLACSDCDKRFAIKRDLVRHTNRVHLNHKPYQCDKCDRAYINNWSLREHKMYSHDGAKRPLRYPCSMCDKVFDRNSILKSHMRTHTGERPYQCSRCPAQFAQGSALGTHVKLVHLKLTRDGRPKSSSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -