Hvit023092.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Horisme vitalbata
Gene Symbol
-
Assembly
GCA_951804965.1
Location
OX638102.1:12886146-12901322[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.067 5.3 8.6 2.6 2 23 581 603 580 603 0.92
2 10 0.0016 0.13 13.7 0.1 1 23 623 645 623 645 0.98
3 10 0.0015 0.12 13.8 0.5 1 23 653 676 653 676 0.97
4 10 0.00022 0.017 16.4 2.8 1 23 686 708 686 708 0.98
5 10 1.7e-05 0.0013 19.9 0.2 2 22 715 735 714 735 0.96
6 10 3e-05 0.0024 19.1 0.2 2 22 775 795 774 795 0.96
7 10 0.00022 0.017 16.4 2.8 1 23 808 830 808 830 0.98
8 10 8.4e-06 0.00066 20.8 0.6 2 23 837 858 836 858 0.97
9 10 1.2e-05 0.00092 20.4 2.2 1 23 864 886 864 886 0.97
10 10 0.00078 0.061 14.7 0.3 1 20 892 911 892 913 0.94

Sequence Information

Coding Sequence
ATGGAAGGTTTATGCAGAGGGTGTTTGCTCTTACACAGTGAGTCCACTGAACTACTGCAATACACTGAAAAAAACAGAAGACTCTTCATCTATGCCACCGGATTACAGGTAAAGCGCAATGACTCGATCACATTCCAACTCTGCAAAGAATGTTATTTTAACATGAAACAGTCATGCAAATTCAAAAAGCAATGCCGAACATCGGACAAGAAACTAAAGAATTATTTGACGCTCAAAGAAGAAGACGGTTTTGGAAGTTCCAAAAATACTGATGAGCATTTATCTCTAAGGCTTCCATTGGCCTCCGGTCATAGCACACCAGCATACCAgaagaatagggatgatgatgataatgatTCCACTTGCACCAGTATCCGGAACTTCATGACTGATATCTTGGATGGTGAGGAGATGCCTCCGACTGAGGCTCGCATCATCCGGGAAGTTATAGAAGAGGAGGCGGATATTTTAGACGACTCACTCGACTCCCATTGGTTGCAGGACAACATGTCTGTTGCAAGCGATTTCGATATTGAttttggagTCAGTCCATTCGCAACGCCACGATCGATCCAAAATGATCACAGCTACACACCAAAAAGGATCGACGAAGCGAAACAGCTCGAAATTAACTTTCTAACTTCAAAAGATATCATTGAGAAAATAAACCAACCAAAAATCGCACAGAAATTCGACATGCCATTATTAGAAGATTTGAGCAATGATATGGAattgaaaaatgtaaaattagAAGGAATTAAAACCGAAAAAGTCGATAAAAATCCAATCGAAAACTCACCAGAGATGCTTGAGTTTAATAACTCTATCCCAAGTGAAGTTGAAGATATGGTGACTGAAAACAGTATATCAAGCAAACTTGAATGCTTTAAAACCGATTTACTAGCAGATCTAACAGACACCAACAATATGGGCCACTCAAGTGATTCCCCCTTTGAATTTGTCGGTACATCTAAACCAGAAAATTCTAAAGACAATATTGTTTCAAGTACAGTTGAGAAAGATATGTGTATTGTAATAAATCAAGGCATAGCGGGGGGAAAAGCCCCGATAACCAATGATCTTGATTATTATGTGAATAAAGCGAAACTGAAGAAGCGCATTGCATCCACAAAGGTTGTGGGTAAAGAGTACCATTGTACGATAGATAGGAATTTGGATATTGCTTTGAAGCACGAAGATGGCGAGCAATTTCCCTTGGAACAGCTGATAACGACGCCTGCagtAAGCATACGGTCTGGTGCTTCCACTCCAACAATCAACAATCTTCTATTTGGAGATAAAGAAACAACATTTAATAAATCCAATACATCAACACCAATGATCGAAAACTTATTGTTCGGAGATAAACTTGATATTGGACCCGCCCCTAAGTATTTCCCACAAGTGGGGCAGTCTATTGACAATCTTGATGATGATTGTGATATTAACTCGGAAGATTTAAACAAAGATCGTACGGGCGATGATAAAACTGAGATTTTAATGGAATTCGAACACGTTACGAAGAAAGATTCATCAGAtgaaaaaaaagacaaacaagATTTGATGAAAAGTGATGATCACATGGATGTTTTAGAAGAGTTTTTAAGAGGGCCAGATGGTCCTCTTAATCTAAATAAGGAAATCATCGACCAAATAATAGATCCACAAGAACTTTCAGACAAAGAACTGTTCAAACGACCCCAGACACCGCCATATGATAAATACGACCTAGAAAAATGTTTCTGCAAGATTTGTAATAAAGGACTGAACTCATCAAAAGCCCTTAGAATACATTTCACTAAAATACACAAGTACAAATTGCCCAATGGTGACACGCACCGGAATAAAACACAGAATAAAAAGATCTATGTGTGTGAAATTTGCGGATTAGATGTCAAAGGTGCGGCGAATTATTCGAGGCACCTGAAGAAGCACAAAgATAAGCTGGTCGGTTACTTCGAATGCGATGACTGCAAACTGTTTTTCAACAGTCGAATGGCGGTGCAGGTGCACATTAAGAAAATGCACATGAAAaggaaagaaaagaagaaaAAATTCGTTTGTTCGACATGCGGTAAAGTCAGTGAAACAAGTTCTCACAACAAGTTACATCAAAGGCGGCACCTCAAGCAGTACTCGGTTAGGTGTGAAATTTGTAACAAAGGTTTCTACAGTAACCACGACCTGGCAGCACATATGCGCACATATGCGGTGAGTCATCGACTAGCGGACTTCTTGAAATTCGTTTGGTCGACATGCGGTAAAGTCAGTAAAACAAGCTCCCACAAGTTACATCAGAGGCACCTCAAGCAGTACTCAGTTAGATGTGAAGTTTGTAACAAAGGTTTCTACAGTAACCACGACCTGGCAGCACATATGCGCACATATGCGGTGAGTCATCGACTAGCGGACTTATTGAAATTCGTTTGCTCGACATGCGGTAAAGTCAGTGAAACAAGCTCTCACAACAAGTTGCATCAGAGGCGGCACCTCAACCAGTACTCGGTTAGATGTGAAGTTTGTAACAAAGGTTTCTACAGTAACCACGACCTGGCAGCACATATGCGGTTGCACAGCGGAGAGCGGCCTTTTGCGTGCCAATATTGCTCTAAGGATTACAAACGCAGAGAACAACTAAATCAACACATAAGGCGGCATATGGGACAACTGCAATACAAATGCGAAGTTTGCCAACTCGGGTTTGTCACTAAAGACTACTTAGCTCGGCACTTCACAACAAAAGGATGTATCGAGAAAAGAAAAAACGCATCTCAAAAGGCAACAGAAAAAGTTACAACCTTGTATGGCAAAGGATCTCTTGATACAATAAGAAAGATGATGTTATCTGCGAATATGGAAGTTGAATCGGAGAATGAAGAAACTGTGGCGTTAGAAGTatcaaataaagttgttataGCAAATTGTATTAATAAGGTTAAAGATGTGACTGAAAATGAAGTGATTGAGGAATAA
Protein Sequence
MEGLCRGCLLLHSESTELLQYTEKNRRLFIYATGLQVKRNDSITFQLCKECYFNMKQSCKFKKQCRTSDKKLKNYLTLKEEDGFGSSKNTDEHLSLRLPLASGHSTPAYQKNRDDDDNDSTCTSIRNFMTDILDGEEMPPTEARIIREVIEEEADILDDSLDSHWLQDNMSVASDFDIDFGVSPFATPRSIQNDHSYTPKRIDEAKQLEINFLTSKDIIEKINQPKIAQKFDMPLLEDLSNDMELKNVKLEGIKTEKVDKNPIENSPEMLEFNNSIPSEVEDMVTENSISSKLECFKTDLLADLTDTNNMGHSSDSPFEFVGTSKPENSKDNIVSSTVEKDMCIVINQGIAGGKAPITNDLDYYVNKAKLKKRIASTKVVGKEYHCTIDRNLDIALKHEDGEQFPLEQLITTPAVSIRSGASTPTINNLLFGDKETTFNKSNTSTPMIENLLFGDKLDIGPAPKYFPQVGQSIDNLDDDCDINSEDLNKDRTGDDKTEILMEFEHVTKKDSSDEKKDKQDLMKSDDHMDVLEEFLRGPDGPLNLNKEIIDQIIDPQELSDKELFKRPQTPPYDKYDLEKCFCKICNKGLNSSKALRIHFTKIHKYKLPNGDTHRNKTQNKKIYVCEICGLDVKGAANYSRHLKKHKDKLVGYFECDDCKLFFNSRMAVQVHIKKMHMKRKEKKKKFVCSTCGKVSETSSHNKLHQRRHLKQYSVRCEICNKGFYSNHDLAAHMRTYAVSHRLADFLKFVWSTCGKVSKTSSHKLHQRHLKQYSVRCEVCNKGFYSNHDLAAHMRTYAVSHRLADLLKFVCSTCGKVSETSSHNKLHQRRHLNQYSVRCEVCNKGFYSNHDLAAHMRLHSGERPFACQYCSKDYKRREQLNQHIRRHMGQLQYKCEVCQLGFVTKDYLARHFTTKGCIEKRKNASQKATEKVTTLYGKGSLDTIRKMMLSANMEVESENEETVALEVSNKVVIANCINKVKDVTENEVIEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-