Hvit005859.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- L
- Assembly
- GCA_951804965.1
- Location
- OX638090.1:11185643-11202593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.8e-06 0.00014 23.0 1.7 1 23 57 79 57 79 0.99 2 16 0.76 59 5.2 5.8 1 23 85 107 85 107 0.97 3 16 1e-05 0.0008 20.6 4.1 1 23 113 135 113 135 0.99 4 16 3.2e-05 0.0025 19.0 0.1 1 23 141 163 141 163 0.98 5 16 2.7e-05 0.0021 19.3 0.1 2 23 179 201 178 201 0.95 6 16 3.4 2.6e+02 3.2 0.2 3 23 225 247 223 247 0.79 7 16 0.37 29 6.3 0.0 3 23 299 319 298 319 0.97 8 16 0.2 16 7.1 0.0 3 23 334 354 333 354 0.91 9 16 5.6e-05 0.0044 18.3 0.6 1 23 362 385 362 385 0.94 10 16 0.039 3.1 9.3 0.1 1 23 390 413 390 413 0.92 11 16 0.002 0.16 13.3 0.2 1 23 467 491 467 492 0.96 12 16 0.0012 0.095 14.1 0.0 2 23 545 566 544 566 0.96 13 16 0.2 16 7.1 0.0 1 23 574 596 574 596 0.97 14 16 1.1 83 4.8 0.3 1 23 700 722 700 722 0.94 15 16 0.0042 0.33 12.4 0.1 1 20 730 749 730 752 0.95 16 16 0.16 12 7.4 0.2 1 23 759 781 759 781 0.94
Sequence Information
- Coding Sequence
- ATGCATCTGATCTCAGAGGCGCTGGGCAGCGTGGGCAGCGCGGCGGGGAGCTCGTGGCCGTCGTCGACGCCGGAGCCCTCCCCGTCGCCAGCTTCCACCCCCTCGGCCGACGCCGCAGATGCAGACGCCGAGCCTCCCTTCACCCTCGGCGCTACGGAGCACACACCCTACCAATGTCAGTTTTGCGACAAAGCCTTCCCGAGGCTTTCATATCTGAAGAAACATGAACAGACTCATTCTGACCAAATGCCGTTTCGGTGTGAGTTTTGTTCGCGTCTATTCAAGCACAAGCGCTCTCGGGACCGTCACGTGAAGCTCCATACAGGAGATAGAAAGTATCGCTGTGCGCACTGCGAATCTGCTTTTTCCAGGAGCGATCACCTGAAGATCCACATGAAAACCCATGACAACCAAAAACCATTCCAATGCACAGTGTGCAACCGCGGCTACAACACCGCAGCAGCTCTGACGTCACACATGCAGGGGCATAAGCGGGAGAGGGAGGGTCGGGAACCTGATCGGAGAAGGCCGATGCGCTGCTTACGGTGCGGGGAAGCGTTTAGAAGACCTGATTTGCTCCAGgcTCATATGGCTAGCGCCCATGGCGTGGACGCCGCAGCCTTGACCCCTCCTCGTCGCGTGGCCTCCCAACCACCCCCAACTCTGCTCGCTTGCATGTATTGCACGCGTGACACTTTTACAAGCATGGAGCAGCTGCAGTTGCACGTGCGAGCCGCTCACTCTGCCTTGCTCAACGGAGAGGCCATGCCAATTATCGACCAACCAGCGCCAACTGACCTTAGCCGCAGAGCTTCAGATGATGCACCACCAGCCAAGCGTCCTCGCTCCGGATCCGGAACACCCCAGACGACGTTATCGCCCAGTACGTTACTATGCAATCAGTGTGATGCAGCATTGCCAGATTTTGAAGCTTTCCGCGCACATTTGAAAGGGCATCTTGAAGAAGGTGGAGAGTTGACTAGAACAAGCCCAGCTCCTTGCGTCCACTGCGGCGCGACATTCGCTGATGCGGCCGCGTCTGAGCGTCACCTGACCGCTCACTACCTGGCTGTTTCCTGCGAGTATACTTGCCACAGCTGTGCTAGGAGCTTTCCGACGCCTGATGATCTGCAGAAGCACCTCTTGGATCTCCACGCCCATCATCTCTACCGTTGCTCTCTGTGCAAGGAGATATTTGACTCCAAAGTCGCAATTCAGGTCCACTTCGCCGTAGCGCATAGTGGTGAAAGCAAGGTGTGGGTTTGCCGTGGGTGTGGCAGCGCGGCGGGAGCCCTGCGCTCGGAGGCCGACGGGGTCGCGCACGTGAGGGCGAGGCACGGCGGGGCTCGCTGCTCGTGCGGAGCCCTACTCGGGGGCCCGAGGCTTCGGCCCAGGGCGTACCGGTGCCCCGTGCCGACCTGCTCCGATGCCTTCGCTGTACAATACTTGCTGGAGCGGCATATGCAAGTCCATCATGCAATGGCACAACAGGTTTTGAACGGAGAGCTGAGCCGACCAAAACGTGTGGAGAACAACAACGGAACAGAAGCCGACGGCACCTGTTCCCCTTGCACCACCAGCGAGCCCACGCCCAGCGAGGAGCGAAGGCGGAAGAATGGTGCTGTGGCTTTACAGTGCGCCTACTGCGGCGAGCGGGCGCGGAGTCGGGCCGAGCTGGAGGCACACACCAGGGCGCATTCCGGGGCCGCCGCCGCCAGACATAAGTGCCTCATTTGTGATGAGATCCTGCCATCCGCAGCGGTACTAGCGGAACACAAACTTACACACTGCAAGGTGGTAGCAGGAGACACTTGCTCCAGATGTCGAAGTCGCCTCCTATCTGAGGAGTCGTTCCTGAACCACATGGCTCGGCACCACCCCGCGCTGCCGGCGCCCTGCGTCGTCTGCCGACAGACGCTCGCGTCTGAGGCCGAGGCGAGACTGCACGCTCGCTTCCATCTCCGACCCAACGAGGATGAACAGAGATGCGCGATCTGCCTGCGCGCTCTGCCGGAGGGCGAGGCGGGCGAGGGCGCGCGCGCGTGCTCGTCGTGCTACGCGCGccacgccgcgccgcgccccgccccgcccgccGACCACGACTGTCGGCTCTGTCGCCGCGCGCTCGGCTCCCCCACCCGCCTCCAAGCGCACCTCATCGAGCACACCTTCGCAGGCATCGGCGCATTCACCTGCTACCTCTGCTCGGCCGTCTTCACGAGCGCGGCGGGCTTGCAACGTCACCTGCCAGAGCACGCGTCCGCGCCCAGGCCGTACGACTGCGCCCGCTGCGGTATCAAATTCTTCTTCCGCGCTGAGCTCGATAACCACGCATTTGTGCATTTGGAGGAGGCGGAGATTGCCCAGCGAGCGTTCTATGAAGCTTACGCGCGTGGGGCGGCCAGTGCCTGGGCCGCGTTAGCACCACCGGAGCCCCCGGCCCCAGAAGTGAAACAGGAGCCGGAGATAAAGGAGGAGCGTAACGATGAGTACATTGAAGTGGCTTCCCCGCCACCGTCCGTTCCCCCCCAGCCAACAGCTGTTCCGACTCCACCCCCAGTTGTGAAACAGGAGAAACCCGATGAAGACTGA
- Protein Sequence
- MHLISEALGSVGSAAGSSWPSSTPEPSPSPASTPSADAADADAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRPMRCLRCGEAFRRPDLLQAHMASAHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEAMPIIDQPAPTDLSRRASDDAPPAKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELTRTSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFPTPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRGCGSAAGALRSEADGVAHVRARHGGARCSCGALLGGPRLRPRAYRCPVPTCSDAFAVQYLLERHMQVHHAMAQQVLNGELSRPKRVENNNGTEADGTCSPCTTSEPTPSEERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGAAAARHKCLICDEILPSAAVLAEHKLTHCKVVAGDTCSRCRSRLLSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRALPEGEAGEGARACSSCYARHAAPRPAPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGIKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPPAPEVKQEPEIKEERNDEYIEVASPPPSVPPQPTAVPTPPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01429280;
- 80% Identity
- -