Hvit015485.2
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638095.1:15459796-15462215[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.1 2.4e+02 3.4 1.1 2 23 4 25 3 25 0.91 2 16 0.0015 0.12 13.8 7.5 2 23 74 95 73 95 0.97 3 16 7e-07 5.5e-05 24.2 1.4 2 23 158 179 158 179 0.97 4 16 0.00087 0.068 14.5 0.1 5 23 190 209 188 209 0.94 5 16 4.4e-05 0.0034 18.6 1.6 1 20 250 269 250 271 0.94 6 16 0.0027 0.21 13.0 0.2 1 23 390 412 390 412 0.98 7 16 0.018 1.4 10.3 0.3 1 23 418 441 418 441 0.92 8 16 0.00023 0.018 16.3 0.9 3 23 449 469 448 469 0.98 9 16 1.8e-05 0.0014 19.8 2.0 1 23 475 497 475 497 0.98 10 16 0.16 12 7.4 0.0 1 23 503 525 503 525 0.92 11 16 1.8 1.4e+02 4.1 0.0 6 20 535 549 534 552 0.94 12 16 3.2e-05 0.0025 19.0 0.0 3 23 579 600 578 600 0.95 13 16 0.0041 0.32 12.4 0.6 1 23 606 628 606 628 0.91 14 16 0.18 14 7.3 0.4 3 23 639 659 638 659 0.97 15 16 0.19 15 7.1 0.0 5 19 667 681 665 683 0.93 16 16 0.004 0.31 12.4 0.2 1 23 691 713 691 713 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTAGTTTGTCAGGAGTGCAACTTGAGGACTTCAACCGATGAATTCATACATCATTTGGAATCTAAGCATAGAGACGTCAGAGACCGAGAACACTTAGAGGAATTTGTAAGAGAACATGTGACCTTTGAGGAGACGCTCCTTTTGGAGCCTGAAGATGTCATGTCGATCGGCTCTCCAGCATCCAACGAAGTTTCAGACGCACCGCAGTCTACGCACTGCACACATTGCACCAAGACCTTCTCCGCTCGCACTGAACTCGCCCACCACCTCAGGACGCATTCAGAGGTTGAACTTAGCTGTATAAATTGCTGCGGCGTCACTGGTGACAGAGAAGAGTTTATAAAGGCGAGCGAAGATCATACTCACGATAGCTTGCGGGGCAGGAGCCCCGATCGCGCTTACCGCCGCCCACCGGAAGCCACTACCATCCAAAAGGAAGAGACCAATCAAAAGCGGATCCCGGCCGTCTGTCCCGAATGCAACCGCACATTCTCCAATAAATACAACATGCTGAACCACATGAAGAGGCACTCAAACACGGAGAGCGAACAGTTCCCGTGCGAGTGCGGCCGGAGGTACAGCACGCGCGGCAACCTGGCGGCGCACCGGCGCGCCGCGCACGCCCCCCGCCCCGCGACCCGCACGCCCGCCGCGCGCGTCTTCCTTTGCCAGCTCTGCGCGCGCGCCTTCCTCTCCCGCAGCGGCCGCGACCGCCACCTGCACACGCACGCGCCGCGCGCCTTCCGCTGCCAGCTGTGCGGCCGCGCCTTCCGCCGCCGCGCGCACCTACGCTACCACTACGAACGAATTTGCAAACCTTCGCATGTAAGCACTATATTGCGTAGGTTCGCGGAGTCTCCCATCCCGGGCGCCTCCGCTGGCGAGGACTCGGAGGACGAGGGCGCACCGCTGGCCGCACTCGTCGCCGCCGACCCGCTGGCCGCGCTGAGGACAGCGCTGCGGGACCTGCGCGACCACTACCTGCAGCGGCACCAGCGGCCGCACGCAGGCGGGGCGCGGGGGGAGGTGCAGGCGGTGGACGGGCTCGCGCCCAGCCCCTACGACGACCTCACGCCGCGTAACCGGCGCCGCGACCGGTTCGACGAAGAGACGCGGCGGGCGCTGGACGCGGCGCGCGTGCACTGTGGCGGTCGCACGCGCTACGAATGCCCCGCGTGCGGCCGCAGCCTGGCCACAGCGCACGGGTACGTGCACCATGCGCGCATCCACACGGGAGCGCGGCCGCACGTGTGCCACGCATGCGGGGCGCGATTCCGCGCGCCGCAGGGACTCGCGCGCCACCTGGCCGAGACGCAcgagcgccgccgccgccgcgcctgCCACCTCTGCGCCGCCACCTTCGCCAACGAGCAGAACCTGCGCCAGCACCTGCGCACGCACACCGGCGAGCGCCCGCACCGTTGCGAGCGCTGCGGTCGCGGCTTCGCTCAGAGTGGCGCCCTGCACGCGCACCGCCGCACGCACGAACCGGCTCGCCCGCACGCCTGCGCGCTCTGCCCGGCCGCCTTCCGCCTGCGCGCCGGCCTGGCGCGCCACGCGCTTGCGCACTCGGGCGCACGTCCTTACCGCTGCGCGTGCGGCCGAGCATTTGCCGCGCGCCACGAGCTGGCGGCTCACCTACCACTgcacgccgccgccgcgccgcaccGCTGCCACCTGGACGACGCCGAGCTAGAGCCTGCGTGCGTACCCGCAGGCCGGCGTGCGTGCGCCACGTGTGGGCGTGCCTTCTCGGACGCGGCCAATCTGGCGCGGCACGTACGCGCCGTGCACCTAGCGCTGCGGCCGCACGCGTGCGCGGCGTGCGGGCTGCGCTTCACACGGCGCGCGCACCTGGTGGCGCACGCGGTGCGTCATGGCGGCGCGGAGGCGGCGCCGGCGCTGCTTTGCGAGGCGTGCGGCGCGCGTTGCGCGTCAGGCGCTGCGTTGCGCTCGCACCGCCGGCGGCACGACGCAGCGCGGCACGCGTGCGGCTGCGGCGCGCGATTCCGGCGGCGCGCGGAGCTGGCAGCGCACGCGTCGTGCCACGGCGGCGCGCGGCCGCACGCGTGCGCGCTGTGCCCAGCCGCCTTCCGCCTGCGCGCGCAGCTCAACATGCACGTGCGCCGACACGCCGCCCAAGGAAGCTCCTTCACAGTAAATCACTCCGACGCGACGCATGCACACTGCGTACTTGAGGACGGTTTGATCTCAACGTAG
- Protein Sequence
- MELVCQECNLRTSTDEFIHHLESKHRDVRDREHLEEFVREHVTFEETLLLEPEDVMSIGSPASNEVSDAPQSTHCTHCTKTFSARTELAHHLRTHSEVELSCINCCGVTGDREEFIKASEDHTHDSLRGRSPDRAYRRPPEATTIQKEETNQKRIPAVCPECNRTFSNKYNMLNHMKRHSNTESEQFPCECGRRYSTRGNLAAHRRAAHAPRPATRTPAARVFLCQLCARAFLSRSGRDRHLHTHAPRAFRCQLCGRAFRRRAHLRYHYERICKPSHVSTILRRFAESPIPGASAGEDSEDEGAPLAALVAADPLAALRTALRDLRDHYLQRHQRPHAGGARGEVQAVDGLAPSPYDDLTPRNRRRDRFDEETRRALDAARVHCGGRTRYECPACGRSLATAHGYVHHARIHTGARPHVCHACGARFRAPQGLARHLAETHERRRRRACHLCAATFANEQNLRQHLRTHTGERPHRCERCGRGFAQSGALHAHRRTHEPARPHACALCPAAFRLRAGLARHALAHSGARPYRCACGRAFAARHELAAHLPLHAAAAPHRCHLDDAELEPACVPAGRRACATCGRAFSDAANLARHVRAVHLALRPHACAACGLRFTRRAHLVAHAVRHGGAEAAPALLCEACGARCASGAALRSHRRRHDAARHACGCGARFRRRAELAAHASCHGGARPHACALCPAAFRLRAQLNMHVRRHAAQGSSFTVNHSDATHAHCVLEDGLIST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -