Hvit029555.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638109.1:2111271-2162493[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.034 2.7 9.5 0.4 1 23 332 354 332 354 0.95 2 21 0.0015 0.12 13.8 0.6 1 23 361 384 361 384 0.94 3 21 1.4 1.1e+02 4.4 1.1 1 23 388 413 388 413 0.90 4 21 0.3 23 6.5 0.2 2 23 453 475 452 475 0.95 5 21 0.0092 0.72 11.3 4.5 1 20 481 500 481 505 0.92 6 21 0.0018 0.14 13.5 2.7 3 23 532 553 531 553 0.93 7 21 0.12 9.2 7.8 0.6 1 20 559 578 559 583 0.92 8 21 0.0065 0.51 11.8 2.6 3 23 653 673 651 673 0.94 9 21 2.9e-05 0.0022 19.2 2.1 1 23 679 701 679 701 0.98 10 21 3.3e-06 0.00025 22.1 0.6 1 22 706 727 706 727 0.95 11 21 0.0048 0.37 12.2 0.6 1 19 913 931 913 932 0.95 12 21 0.13 9.9 7.7 1.6 1 23 940 962 940 962 0.97 13 21 0.0092 0.72 11.3 4.4 1 23 967 990 967 990 0.97 14 21 0.11 8.9 7.8 0.7 1 23 994 1017 994 1017 0.95 15 21 2.9 2.3e+02 3.4 0.0 2 20 1030 1048 1029 1050 0.89 16 21 0.0055 0.43 12.0 0.1 3 23 1064 1085 1062 1085 0.95 17 21 0.00044 0.034 15.4 0.9 2 23 1111 1133 1110 1133 0.97 18 21 0.00071 0.055 14.8 0.4 1 23 1146 1168 1146 1168 0.95 19 21 0.00051 0.04 15.2 1.7 1 23 1174 1196 1174 1196 0.97 20 21 1.2e-07 9.6e-06 26.6 1.0 2 23 1202 1223 1202 1223 0.98 21 21 9.9e-05 0.0077 17.5 0.1 1 23 1228 1251 1228 1251 0.97
Sequence Information
- Coding Sequence
- ATGCCTGTCATGTGTCGGATATGTTTACGGTCCGCTAAAGATGCTGCAGACACTGAAAATACCCTCGTTGAGTTTCACTTCGATTTGTGTGAGAACGACGTTGTTAATGACCCTCCAGTTAAGTTCTGTCAGATTTGCGAGTACCAGTTGAGGAAGTTTTACAATTTCCGTCAGAGATGCAGACGTTCCAACAATGTACTCAAAGCTTGGAAAGAGACTAATATACCTAATAGTATCGAAGATCTACATACGCTGATCCCACCTTCATCCATCACATGTCAAACCGAAAATGCTGAACTCAATTCGATAACACTTTCACACACCGACTCACCTGAAGTGACAGTTAAGCTCGAAAgtgattttccttcaaaaacTGACGAATCTATTATagctgaaaattttaaattagattttgaTCCTAACATTAATAATCTTAACATAGACATAAATCTAAAAAACATACAAGAAATAGGGTTTaaagaagaaaatttattttgcgAGGACTTcaatgatgattttgatgatgaggatgattcTAAGCCTCTCAGTGAAACAATAAGAAAATCCAAGAAAAAGAAACTGGTACGAAAAATCAAACGgaaacacaaagaaaaagttGTATTGGACAATAAAAGAGATTCGGACATTAAAAGAGATAAGAGAAAAAATCTGTCTAAAATAAGAGACAGGATATTGGAATTGATGGAGCGTGGGGAGCTACAAGAGATCGGAGATAATGTTACGATGAACAAGGAGTTATTTTTGGAGATGTTTGATAAGTGCAATAAGACAGGGTTACGTTGTACCATGTCACCTTTTAAACCTGGTTCATCCGAAGAAATAGAACGACTAAGCAGTTTTCTCCTGTATCTCCTTAAGAAAAACAACCCTGAGTATGCTGTTATGTTTGATATTGAACATCTAGACACTTACGAAAAGAAACTAGATGAGTTCAAGAGGAGACAACACAGCAAGGAGTATTTGGAAGCGGAGTTCAAATGTGATATATGTTATAAGATTTTTGAGGTTCCCAGATTACTGGATTATCATAGTAAATGGCATGAGCCTAGCACAGGATCacatgtatgcgaaatttgCGCGATGCGATTCGCGAGACAAAAATCGCTAGCGCAACATCTAAAAGACAACCACTGCGCTGTGTACCGATGTAAGCTGTGCCCACAGATAACATACAGCTTTAACAAGAGTACAATGAACAACCATCGGTTGCAGGCGCATAAGACTTCGCATATATGCGCTCTGTGTGCGCGCTGCTTCGTATCGGAAAAAGGATTGTACTTCCATAAGAGGCTAAAACATAAGGACGAAACAGCGACCAAAACTGAGCAAGCTGTCTCGTGCGACAAATGCAACGCAATATTAACATCGGCGCAAGTTTTACACGCACATATCAGGCAAATGCACAGCGCTAACACTATtcACAAATGCTTTCATTGCAAGGAAATATTTAGTAGCTTGGAACAGCTGAAGAAACACAAGATAGATTTTAACCACCAACGTGCACCGAAGACGCCATCAACTGTCAAAGATGACGAAAAGGTAATACCTCTAAATACAGATGATAAACCATTTTGCGAAGAATGCAATAAATCATTCAACACGCGCAAAAGCTATCTAAGGCACTTCAATTTGAACCACAACGTTAATAGAATTCATAAATGCGGATTCTGCCAAGCCAAGTTTACATCTTCGGAGGAGATAGAAGCACACAGGGCCGCTTACAACCACCATCTTAAAGTGAGATATGTGAAGAGAACTAGAAAGAACAACACAGGCACTAAACGACTGAGGTGCAACAAACCATTCGAGAAATGCGACCTGTGCGATGAGATGGTATCGACTAGTCGTGTGAACGCAATGTATCAACACTTCCAAGCTAGCCATCCGGATATACCATACACTTCCGTTTACTCCAACCCACACAACCGACACCTGTGCGAGGAGTGCGGGAAAACGTTTAAAGATCTACGATTCTTCCTAGATCATAAGAATCTACATACAGGTGCGAAACCTTACCCTTGCACACTCTGCTCGCGAAGTTACGCCACTAAGCGGCATCTGACCTGGCACATGGAGAGGCACGGGCCGCCGCGGCATCAGTGTAAGGAGTGCGGGAAGATGTTTAACAGTGCTGGCAACTTATTCGCACATAGACGGaGTGGCCCATCGAAGCATTGGTTCTGCTCCGAATGCGAGGAATCACTAAAGAGCAATTTAGAATTCAGAAATAAATGTCGGAATTCAAACCAAATACTACAAAACTGGGAGTGGGATAAGAGTCAGAGAGTACaaagtgataatgatgattttgatAATGTACATGATTTGAATGATGATTTTGAAACGCACGAGGAGAATATTGTTGTTGAAAGTATTAAGCGTAAAGTTAAGAATGTTAAAGCTAAGAGATCAAAGGAGGTTAAGGTTAAGGCGAAGAAAACAAAATTGACGAATAAAACTATTAAGAAAGTGCCGACAAAATATAAATTGCGCGGTGAAATAGCTAAGCGCAGTGAGTTCACGCAGTACGAAGCAGTGTTTGATGTCGAGCTGTTCGAAACATATGCAGatGCTAGAAGAGAACTCGTGGGACGTAGAGTCTCTGAGCCGTACATATCAGCTCAGTACCGCTGCGAGCTCTGTTACACCGTGTACAAGTGCGACAAGCTGCTGCAGTTCCACATGAAGTGGCATGACCCATCCCCGGAGCTATCTCACGTGTGTGATGTCTGCAGCATGCGGTTCGCGACTCGCAGCACTCTGCTGAAGCACAAACCGGCGTGCCACCGCGGCAAATTCTCCTGTAAGATGTGCCCACTCGTCACCTACCAACGgcaGGCAATGAAGTCCCATTTCCAGAAACACCAAGGAAAGATCTATACATGTGAAGTTTGTGATCACGGTTTCAAGCACATATCGTCATACATGACGCACAAAAGGCTGACGCACGCGACATCACACGTCTGCGTCACCTGCGCTAGGACGTTCGTCTCGGAGTTAGGATTGCAAACGCACAGACTTAAGATGCACCAGGCAGATTCTAAAATAACCAGCGATTGTTCAGTGCGCTGTGAGCCTTGCGGACTGACGTTTCCGAACCAACAAGTCTACACTGTCCATGTACTGAATACTGATGAACACAAACAGATCGCCACCTCCATGATAGCTTGCTCCATCTGTGGTCTCTCCTTCGAGGATATGGCTCAGGTGAAGGAGCACCGTCGCCTCAGCCACCCCCGACCGCCGAGGAAGCAACAAGTGAGAAGGAAGGACTACCAGAAGAAGAAGGAAAAGAGCGGCGAGGCTATTCAGTGTAAAGTTTGCGGTGTAACTGGCAGTAACAACTCGTGGCTGTACCATCATTACCGGACGTCACATCCGACTCATCGCTACGAGGCGACCTGCGATAGGGAGTTCCTATGCGACCAGTGCGGGAGAGGTTTCTATAATAAAACAGTTTTGACTGAGCATATGTACGTACATTCTGGACTGAAGCCGTTTCGCTGCGAGACTTGTCCTGCCGCGTTCAGATCTAAACAACACCTCAAGTTGCACGAGGAGAGACATTTACCGCCGTCGCGTGAATGTCCACATTGCGGGAAGAAGTTCGCCAGTGCTTCCAACTTATCCAATCATATTCGGTCTCACGGCGCGCGTCGTTATACATGCGATGTATGTGCAAAGGGTTTCGTACAGTTCTCATCACTCCGAGAGCATATACGAGGCGTTCATCTGCAGATACGAAACCCTAGAATAAGGAAACATAAGCTTTCTTACGGAGAGAAGATAGAATAA
- Protein Sequence
- MPVMCRICLRSAKDAADTENTLVEFHFDLCENDVVNDPPVKFCQICEYQLRKFYNFRQRCRRSNNVLKAWKETNIPNSIEDLHTLIPPSSITCQTENAELNSITLSHTDSPEVTVKLESDFPSKTDESIIAENFKLDFDPNINNLNIDINLKNIQEIGFKEENLFCEDFNDDFDDEDDSKPLSETIRKSKKKKLVRKIKRKHKEKVVLDNKRDSDIKRDKRKNLSKIRDRILELMERGELQEIGDNVTMNKELFLEMFDKCNKTGLRCTMSPFKPGSSEEIERLSSFLLYLLKKNNPEYAVMFDIEHLDTYEKKLDEFKRRQHSKEYLEAEFKCDICYKIFEVPRLLDYHSKWHEPSTGSHVCEICAMRFARQKSLAQHLKDNHCAVYRCKLCPQITYSFNKSTMNNHRLQAHKTSHICALCARCFVSEKGLYFHKRLKHKDETATKTEQAVSCDKCNAILTSAQVLHAHIRQMHSANTIHKCFHCKEIFSSLEQLKKHKIDFNHQRAPKTPSTVKDDEKVIPLNTDDKPFCEECNKSFNTRKSYLRHFNLNHNVNRIHKCGFCQAKFTSSEEIEAHRAAYNHHLKVRYVKRTRKNNTGTKRLRCNKPFEKCDLCDEMVSTSRVNAMYQHFQASHPDIPYTSVYSNPHNRHLCEECGKTFKDLRFFLDHKNLHTGAKPYPCTLCSRSYATKRHLTWHMERHGPPRHQCKECGKMFNSAGNLFAHRRSGPSKHWFCSECEESLKSNLEFRNKCRNSNQILQNWEWDKSQRVQSDNDDFDNVHDLNDDFETHEENIVVESIKRKVKNVKAKRSKEVKVKAKKTKLTNKTIKKVPTKYKLRGEIAKRSEFTQYEAVFDVELFETYADARRELVGRRVSEPYISAQYRCELCYTVYKCDKLLQFHMKWHDPSPELSHVCDVCSMRFATRSTLLKHKPACHRGKFSCKMCPLVTYQRQAMKSHFQKHQGKIYTCEVCDHGFKHISSYMTHKRLTHATSHVCVTCARTFVSELGLQTHRLKMHQADSKITSDCSVRCEPCGLTFPNQQVYTVHVLNTDEHKQIATSMIACSICGLSFEDMAQVKEHRRLSHPRPPRKQQVRRKDYQKKKEKSGEAIQCKVCGVTGSNNSWLYHHYRTSHPTHRYEATCDREFLCDQCGRGFYNKTVLTEHMYVHSGLKPFRCETCPAAFRSKQHLKLHEERHLPPSRECPHCGKKFASASNLSNHIRSHGARRYTCDVCAKGFVQFSSLREHIRGVHLQIRNPRIRKHKLSYGEKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -