Hvit029166.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638108.1:6714033-6718777[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 3e-05 0.0023 19.1 4.5 1 23 15 37 15 37 0.98 2 26 0.33 26 6.4 1.4 1 22 92 113 92 115 0.85 3 26 0.73 57 5.3 0.1 1 23 138 161 138 161 0.95 4 26 0.00017 0.013 16.7 0.5 1 23 182 204 182 204 0.98 5 26 0.0037 0.29 12.5 0.2 1 23 208 230 208 230 0.96 6 26 0.057 4.5 8.8 0.3 2 23 235 257 234 257 0.96 7 26 0.07 5.5 8.5 2.5 2 23 262 284 261 284 0.94 8 26 0.046 3.6 9.1 3.2 1 23 290 313 290 313 0.95 9 26 0.0016 0.12 13.7 5.6 1 23 319 341 319 341 0.96 10 26 0.065 5.1 8.6 6.4 1 23 347 369 347 369 0.96 11 26 0.25 20 6.8 1.4 1 23 420 442 420 442 0.96 12 26 0.38 30 6.2 0.3 2 23 471 493 470 493 0.93 13 26 0.0043 0.34 12.3 0.6 2 23 514 536 513 536 0.95 14 26 0.0015 0.12 13.8 3.2 3 23 543 564 542 564 0.97 15 26 0.036 2.8 9.4 0.7 1 23 569 592 569 592 0.94 16 26 2 1.6e+02 3.9 0.1 2 23 595 617 594 617 0.90 17 26 0.0052 0.41 12.1 2.4 2 22 624 644 623 644 0.94 18 26 0.0094 0.74 11.2 0.6 1 23 702 725 702 725 0.90 19 26 0.68 53 5.4 0.2 2 23 753 775 752 775 0.94 20 26 0.2 16 7.1 0.2 3 23 799 821 797 821 0.94 21 26 0.00076 0.059 14.7 0.4 3 20 828 845 826 849 0.90 22 26 0.06 4.7 8.7 0.5 1 23 854 877 854 877 0.97 23 26 0.00063 0.049 15.0 0.2 2 23 883 905 883 905 0.94 24 26 6.2e-05 0.0049 18.1 4.7 1 23 909 932 909 932 0.97 25 26 0.0007 0.055 14.8 0.6 2 23 939 960 938 960 0.96 26 26 0.0075 0.59 11.6 2.3 1 23 966 988 966 988 0.97
Sequence Information
- Coding Sequence
- ATGGAGCATCACCTCAGGGTTATTCATTATAAAGACACGCAGTTTAAATGCCCTTCGTGTGAGCGAAGATTCTGTAGTAACAGGCAGCTGACGAAGCACATGATGCTTCATGATAGAGAAGATACAGTTCATCCTTGTGTCGTACGCCTCGACTCCAATGCGCCGGTTAAGTCCGAGTTATCGGCCAAAATGAGCAATCAGTTAAGCAAACGAAACATCATCGCGATCCTGAAATACAGCACGGCACTACCATTCAAATGGCACAAACAATTCTACATGTGCTTTTACTGCCATAAACCTTTCGAACTCTTTAACGATGTTAGAGAACACACAATTGACGAACACAAGACTATTAATATCAGTTCTTCGTTTTTAAGTTGGTCTGGCACGGTGAAAATCGATGTTGCATCATTCTCATGCAGGATTTGCGACTTCGAACCTACAAATGTCGATGCGCTTATGAAGCATCTAACCCGAGCACATAAGATAGAATTCGAAGATGCCGCTGTAGGTATTTTGCCGTACAAGTTTATGGAGAACTCTTATGATTGCGCGATATGCGACGAGAGTTTCGCTTACTTTATGAAACTGAACCAGCATATGAATAAGCATTTCGGACAGTTCATCTGCGAGACTTGCGGTAAATCTTTTCTCAGCAAAGCAAGGCTCAGAATCCACGCGCTTATTCACGAACGTAACGTTCGCTGTGAATTCTGTCCCGAGATATTCCGTACTATCTCTATGAAGAACACTCATGTTAATAAAGTTCACGATTCGAAGGTTAAATGTGCTCATTGCTCGGAATCGTTTTCGAGCTACAATCAAAGGAAATTGCACCTTAAATTCGTGCATAATGAGGGTACTTTGCATCCGTGCCCTGTTTGCGGGAAGGAATACTCTTGCAACAGTAGAATGGAGCATCATCTTAGGCTTGTACATTATAAAGAGACGAGGCATGATTGTCCCATGTGCGAGCAAAGGTTCTATTGCAAATCTCAGTTGAAGAAACACATGAGGGTGCACGATAAGAGCACGGATCATTGCTGTCAATTTTGTGGAGAGACTTTCTCTAAGGCGTGCGTTTTGAGAGAACATTTGAGTACGCATATTGTTGATAGAAAGtacaaaactaatttattttcagatgTTAAACCGCGCAAATACAAGGGCTGCGAATCATCATCGATGCGCAGAAGAAAAAACCTTCAAATATTGTTCAACAATACCTCCATCATACCCTTTAAATGGAGAGGAAAGTATCTATGTTTCTACTGTAGCAAAAACATAGCGGAATACAAGGAGTTACGGTCACATACAAAATCACACGGTCATTGCTCTATAGTCGATCACTCTTTGAAAGTCCTGAAAGGGGGTACAAATATGGAAATCAAAATCGACGTATCTGACGTCACTTGCCACATTTGTGGTTCAATGCTCTCGTCTTTCGAAGAAGTGATAGATCATCTAAAAGCCAAACATAAAGTAGAGTATGATAAGGAAGTAGACATGGCTATCGAAGAGTACAAACTAGCAAATCTCAGCTGTCTGACATGCGATGAGAAATTCACATACTTCGGATATTTGGTCTCGCATATGAACAACCAACATCCGAAGAATTGCATCCTATGCGATAAATGCAACCAAAAGTTCAATAAAAAGAGGGACCTATTCTCGCATATGAAGAACTATCACAGAGAGGGGGGTTATCAGTGCGATCTGTGCCCGCAAACATTCGGTTCGTTGAACATACTGAGGAAGCACAGGAGCAATCGACATCTGACGAGGTGCAATATTTGTCAGCTGAGGCTCCCTTCGGCAGCTTTGAAGCAAAAACATGTAGAACTCGAGCACCCAGACGATGGTTCGTTGAAATGCGACAACTGTAACAAAGACTTCCACACAAAGACTGGACTGAGAATGCACACCAGGAAATGCAAGGTAGATCTATTCGAATTTGCTGTAAAGAAAGAAGACTATACCATGGATTTGGATCAGAACTATGAGGACCCAGCAAAAAAGCCGAGTGTGAAGCAAATCCGAGAGAATATAGTGATAGTTATTAACATGTCCACTGCTATACCATTTAACTTCTACAAGAACAAATTCAACTGTTTTTATTGCTCTAAAGATTTTCCCGATTCTGATTCTATGCGGGAGCACACAGTGTTAGAACACCCAGTTTGCGATGTAAAagaaaaatgcataaaaaaGTGCAGGGAAACAGTCACGTGCGTCAAAATAGATGTATCAACATTATCCTGTAAGGTCTGCTTCGAATCTATGACCGATTTGGACAAACTCCTCGACCATTTGATCATCAAACACAAAGCTAACTATGACAAGTCAATAACGACATGCCTGCAGCCGTATAGATTAGTCAAAGATCACATGGCATGCCCTAATTGTCCGAGTGCGGTGTTTAGATTCTTCGGAACTCTGCTAAAACATATGAACAAAGAGCACACTAATAACAACATTATTTGCGTGTACTGCGGCGAGACATTTCGTCGCGATCAGAACCTCCGTGTTCACATATGGCGGCATCATCGCGATGGCAGATTCAAATGTACCATTTGCGATGCTGACTGCAATATACCCTCTCGTCTGTACATGCATATGGCTAAAGCTCACGGGGTTAGAGCCGCCAAGTGTCCGAAATGTCCAGAAACCTTCGCCACTCAGTACCTAAGACAGAAGCATTTGATAGAAGCTCACAACTCGGGTCACAAATGCAGTTACTGCGGAAAGCTCTTTACTAGGAACTCGTTTATGCGGGATCATATCAGGCGTACGCATTTGAAAGAAAAGAATGTGGAATGCTCTATTTGTAGTATGAAGTTCTTTAATAATATTCTTCTGAGGCGGCACATGGTTAAACATAGTGGGGAGAAAAACTTTCATTGTGACGTTTGTGGGGAGAGATTCTTTTGGAGGAAAAGTTTGAGGACTCATATGGCGAGGCACAATAAGCATCATCAACCTTTACATAATATGTAG
- Protein Sequence
- MEHHLRVIHYKDTQFKCPSCERRFCSNRQLTKHMMLHDREDTVHPCVVRLDSNAPVKSELSAKMSNQLSKRNIIAILKYSTALPFKWHKQFYMCFYCHKPFELFNDVREHTIDEHKTINISSSFLSWSGTVKIDVASFSCRICDFEPTNVDALMKHLTRAHKIEFEDAAVGILPYKFMENSYDCAICDESFAYFMKLNQHMNKHFGQFICETCGKSFLSKARLRIHALIHERNVRCEFCPEIFRTISMKNTHVNKVHDSKVKCAHCSESFSSYNQRKLHLKFVHNEGTLHPCPVCGKEYSCNSRMEHHLRLVHYKETRHDCPMCEQRFYCKSQLKKHMRVHDKSTDHCCQFCGETFSKACVLREHLSTHIVDRKYKTNLFSDVKPRKYKGCESSSMRRRKNLQILFNNTSIIPFKWRGKYLCFYCSKNIAEYKELRSHTKSHGHCSIVDHSLKVLKGGTNMEIKIDVSDVTCHICGSMLSSFEEVIDHLKAKHKVEYDKEVDMAIEEYKLANLSCLTCDEKFTYFGYLVSHMNNQHPKNCILCDKCNQKFNKKRDLFSHMKNYHREGGYQCDLCPQTFGSLNILRKHRSNRHLTRCNICQLRLPSAALKQKHVELEHPDDGSLKCDNCNKDFHTKTGLRMHTRKCKVDLFEFAVKKEDYTMDLDQNYEDPAKKPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVLEHPVCDVKEKCIKKCRETVTCVKIDVSTLSCKVCFESMTDLDKLLDHLIIKHKANYDKSITTCLQPYRLVKDHMACPNCPSAVFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCTICDADCNIPSRLYMHMAKAHGVRAAKCPKCPETFATQYLRQKHLIEAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHHQPLHNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -