Hvit029847.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638109.1:7119916-7123241[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.2 16 7.1 4.4 1 23 189 211 189 211 0.97 2 14 4.4e-05 0.0034 18.6 1.1 1 21 217 237 217 238 0.95 3 14 2.4e-05 0.0019 19.4 0.8 1 23 254 276 254 276 0.98 4 14 3.5e-05 0.0027 18.9 1.6 1 21 282 302 282 303 0.95 5 14 5.7e-06 0.00044 21.4 1.2 2 23 315 336 314 336 0.97 6 14 0.00032 0.025 15.9 2.4 1 22 342 363 342 363 0.95 7 14 0.0002 0.016 16.5 0.5 3 23 373 394 371 394 0.96 8 14 0.02 1.5 10.3 3.2 1 23 400 422 400 422 0.97 9 14 3.1e-05 0.0024 19.1 1.0 1 23 428 450 428 450 0.98 10 14 1.9e-06 0.00015 22.9 1.5 1 23 456 478 456 478 0.99 11 14 1.4e-05 0.0011 20.1 2.4 1 23 484 507 484 507 0.98 12 14 1.5e-06 0.00012 23.2 0.2 1 23 513 535 513 535 0.98 13 14 1.6e-06 0.00013 23.1 0.6 1 23 541 563 541 563 0.98 14 14 4.8e-05 0.0037 18.5 1.9 1 21 569 589 569 590 0.93
Sequence Information
- Coding Sequence
- ATGTCTCGGGATTCTGTGTGCAGACTTTGTCTCGGCGAAACTAGCATAAATAGTTACTGCGTTGACGATATTGCACTCCTGGAGATATAtgaaaaacttataaatttcAAGgtCAACACAGAAGATAGAATGCCTAAAACATTATGCTCCATTTGTCACTCGCGGTTACGGAGTTTCAAGAAGCTGTCTGCTACTGCTCTCAGGTCTGAGAGAATACTGAGAGATATGTACAGAGGTGGTATTGAAgagATAACATTCAATACCATTAACACACTCAACCTTGGACCAAAGGAACTTTTGAACATAACTCCAATACAGTTCACATCGACAGACGATTTAAACAAGGGACTTGATGGTTTACCTACGAATACGACACAaggatattatgtatgtatacacAACAGTTTATGTATGTACGATAGTGCATCTGTACTTAAAGAAGAAGTGAAAACAGAGAGTGGTTTTGATGACAGTACTGTTAAAAATGAGAATGAAGATGATTTGAACGATTTTAAAGGTGCAAAGTATCGAATAAGCAGAGAGAATGTCACTAAAACATCAAGGTTTGAATGCGATTTGTGTTGTAAAAGATTTGCTACAATACATCTGCTCAAGTCACATAAGATCAGTCATTCCGCTGAAAAACCGTATGCTTGTAGTAGTTGCGAGAAATCCTTCTCCAGAAAACATAACATGGTGCAGCATATGAAAATTTGCAACCCGCAAAAATATGAAACAGATATAAAAGATGGAGTGTTTTTTCAATGTGATATATGTAACAAGAGATTCACAAAAATAGTCCTCTTAAAGTCACATTTAGTCACCCATTCCAGTAATAGACCGCACTCATGTGAGGGCTGCAAGAAATCGTTCTCGCGAAAGCAAGGCATGAAGCAACACATGAAAATTTGTTCTGAAGTGAAGCCTCATGTCAAAAAACTCTCTTGTACGTATTGTACGCGAATCTTCACTTCTAAATCTGATCTAAATGATCACTTGTCGACACACTCCAAGCAAAAACCATACAACTGCGTAAAATGCAACAAATCATACACATCAAAACAGAATATGAAGCAACACCTTAAAAAATGCTTCACAGGCAATGAACTCGTGAATTGCACCCTTTGCGCCCAAACTTTTGCAACCAGAAGCGATCTCAGTAAGCATTTGAACAAGGATCACTATgaagataaacaatttatatgCGATAGATGTAGCTCAAAATTCTGGAACAAGAACCACTTAAAGTTACATATGAGAATTCATACGGGCGAAAAACCTTTCACCTGTGAGAAGTGTGGAAAAGCTTTCACACTGGGTAACCATCTAAAAGCTCATTTAGTCACGCATACAGGCGAAAAACCATACTCCTGTGATACTTGCGGGAGATCTTTTCGTGTTCTCTTCACATTGAGGGTACATATGCGTAAACACACAGGTGAAAGGCCATTTACATGCAGCATTTGTGCCAAAAAATTCGGGCATCAAAGCACACTGAAACTGCACATCCGAAAGGTTCACATGGAGGCAAAACCGTTTCCTTGCAACAAATGCTCTCTATCATTCTCGCAGGAGAGCGCACTGACAGCACATTTACGTGTACATACAGCAGAGAGACCTTACGCATGTCATATCTGTGATAAGACTTTTATAGAGGCCCGTAATTTAAAAGGGCATATGCAAGTGCATTCTGAAGATAGACCCCATGCTTGCAGTTTGTGCGGAAAGGCGTATAAACGAAGAGAGCATTTGAGGAAGCATGCGAGATTTAAATGCAAGGCTGGTATACCGTTTGAATTGCCGAAATAG
- Protein Sequence
- MSRDSVCRLCLGETSINSYCVDDIALLEIYEKLINFKVNTEDRMPKTLCSICHSRLRSFKKLSATALRSERILRDMYRGGIEEITFNTINTLNLGPKELLNITPIQFTSTDDLNKGLDGLPTNTTQGYYVCIHNSLCMYDSASVLKEEVKTESGFDDSTVKNENEDDLNDFKGAKYRISRENVTKTSRFECDLCCKRFATIHLLKSHKISHSAEKPYACSSCEKSFSRKHNMVQHMKICNPQKYETDIKDGVFFQCDICNKRFTKIVLLKSHLVTHSSNRPHSCEGCKKSFSRKQGMKQHMKICSEVKPHVKKLSCTYCTRIFTSKSDLNDHLSTHSKQKPYNCVKCNKSYTSKQNMKQHLKKCFTGNELVNCTLCAQTFATRSDLSKHLNKDHYEDKQFICDRCSSKFWNKNHLKLHMRIHTGEKPFTCEKCGKAFTLGNHLKAHLVTHTGEKPYSCDTCGRSFRVLFTLRVHMRKHTGERPFTCSICAKKFGHQSTLKLHIRKVHMEAKPFPCNKCSLSFSQESALTAHLRVHTAERPYACHICDKTFIEARNLKGHMQVHSEDRPHACSLCGKAYKRREHLRKHARFKCKAGIPFELPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -