Basic Information

Insect: Horisme vitalbata
Gene Symbol: -
Assembly: GCA_951804965.1
Location: OX638109.1:8032089-8033656[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.4e-05 0.0018 19.4 1.9 1 23 161 183 161 183 0.98

2 12 0.00018 0.014 16.7 3.0 1 23 189 211 189 211 0.97

3 12 3.8e-06 0.0003 21.9 4.8 1 23 217 239 217 239 0.99

4 12 2.9e-07 2.3e-05 25.5 0.4 1 23 244 266 244 266 0.98

5 12 2.2e-06 0.00017 22.7 1.5 2 23 271 292 270 292 0.97

6 12 0.0012 0.096 14.0 0.7 1 23 297 319 297 319 0.97

7 12 0.00086 0.067 14.5 4.6 1 23 325 347 325 347 0.96

8 12 4.4e-06 0.00034 21.7 0.5 1 23 353 375 353 375 0.98

9 12 2.4e-06 0.00019 22.5 1.1 1 23 381 403 381 403 0.98

10 12 4e-05 0.0031 18.7 1.2 1 23 409 432 409 432 0.96

11 12 2.5e-06 0.0002 22.5 0.9 2 23 439 460 438 460 0.97

12 12 2.7e-06 0.00021 22.4 2.2 2 23 468 490 468 490 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.4e-05	0.0018	19.4	1.9	1	23	161	183	161	183	0.98
2	12	0.00018	0.014	16.7	3.0	1	23	189	211	189	211	0.97
3	12	3.8e-06	0.0003	21.9	4.8	1	23	217	239	217	239	0.99
4	12	2.9e-07	2.3e-05	25.5	0.4	1	23	244	266	244	266	0.98
5	12	2.2e-06	0.00017	22.7	1.5	2	23	271	292	270	292	0.97
6	12	0.0012	0.096	14.0	0.7	1	23	297	319	297	319	0.97
7	12	0.00086	0.067	14.5	4.6	1	23	325	347	325	347	0.96
8	12	4.4e-06	0.00034	21.7	0.5	1	23	353	375	353	375	0.98
9	12	2.4e-06	0.00019	22.5	1.1	1	23	381	403	381	403	0.98
10	12	4e-05	0.0031	18.7	1.2	1	23	409	432	409	432	0.96
11	12	2.5e-06	0.0002	22.5	0.9	2	23	439	460	438	460	0.97
12	12	2.7e-06	0.00021	22.4	2.2	2	23	468	490	468	490	0.96

Sequence Information

Coding Sequence: ATGGCCCTTGTCTGCAGAGTGTGTCTCGCCTGCAAAGTCAGGATGCACGGCGTTGAAGATACCCAACTCCTAGAAGTTTACGAAAAACTCTCAAATGCCAAGatggAAGATAGAAGGCTCACACTATGCTTTATTTGTTACTCCCAGCTGCAAAGATGCCGCAGATTCTCCGACTTGGCTCAAAGATCTGAGAGGATCTTCCTAGACGTGTTAAAAGATGGCACTGCGCCGACAGCTACAGCTGTGTTAGATATAACAAAAGACGAAACAACTAACTACGACTTGTCTTTACAAACTACACAGTCATTTGATGATGTTTACGATGGAACTGAACAACAATCtattaaagaagaagaagatatagAATTGGCGATTCCGTCTATAAAAAAAGAACTCAATGATGTACCTACTGATGAAGATACAAACAATCAACTCAAGCAAACAGAAGACTCACAAAACTTACCTAAGACTACCAAAAAATATGCATGCGATATGTGCACTAACTCATTTGCACAAAACTATAAACTACAACGACACAAACGAACGCACACCGGTGAAAAACCATACACTTGCGGCGAATGCCACAAATCGTTCGCCTTAAAATATTACTTGTACAAACACAGCATGATCCATACCGGTGTGAAACCCTACACATGCTCGAAGTGCGACCGAAAGTTCCGAACCATTAATCATTTGAAAGTCCATTTGCGGACACACAAAGAAGGCATATACCCTTGCAACTATTGCGACAAAATATTTACGCAACCCGTGGATCTGAACCAGCATAAAATGACGCACAAGACAGACACACCTTGCAAATATTGCAACAAGACATTTGAAAGCCGAAAAAAGTTACAGATTCACATGCAGATTCACACAGGAAAGGTGTTCGCTTGCGATCAGTGTGATAAAACGTTCGCGCTCAGATCGAGGCTAAACTTCCACATGAACATACACTCTAATAAAAAACCTTTTACTTGCGATCGATGTGCAAAGTCATTTACATCCAACTGCGGTCTAAAACATCACATGGTGCTGCATTCTGGAGAACGTCCATTTTCATGTGACATATGTAATAAGACTTTTGCTCGAAAATTTGAAGTTGAACTGCATTTGCGCGTTCACACGGGAGAAAAACCTTATGCTTGCAGTGTATGTGACAAAAAATTTAGCCAAAGCGGTACTTTGAGTTTACACAAGCGAACCCACACAGGTGAACGGCCGTTTGCATGTGAAATCTGCGAGAAAAGATTCGGTGATAAACACACGATGCGAAAACATGTTAGGGTGGTGCATAGCGGAGTGCCTCCGGTGTCTTGTGAGTTGTGCGGCAAGACATATTCTTCTAAGAGTTCAATGTACACCCACATGCAAACTCACAAGCAATCCGGTGAGAGACCTACATGTGATATATGTAATAAAACGTTTAGCAATAAATGGGCCTTGAAAAAACATACGAACAAGTTTCACCCTCAAGACGTTCATTGA
Protein Sequence: MALVCRVCLACKVRMHGVEDTQLLEVYEKLSNAKMEDRRLTLCFICYSQLQRCRRFSDLAQRSERIFLDVLKDGTAPTATAVLDITKDETTNYDLSLQTTQSFDDVYDGTEQQSIKEEEDIELAIPSIKKELNDVPTDEDTNNQLKQTEDSQNLPKTTKKYACDMCTNSFAQNYKLQRHKRTHTGEKPYTCGECHKSFALKYYLYKHSMIHTGVKPYTCSKCDRKFRTINHLKVHLRTHKEGIYPCNYCDKIFTQPVDLNQHKMTHKTDTPCKYCNKTFESRKKLQIHMQIHTGKVFACDQCDKTFALRSRLNFHMNIHSNKKPFTCDRCAKSFTSNCGLKHHMVLHSGERPFSCDICNKTFARKFEVELHLRVHTGEKPYACSVCDKKFSQSGTLSLHKRTHTGERPFACEICEKRFGDKHTMRKHVRVVHSGVPPVSCELCGKTYSSKSSMYTHMQTHKQSGERPTCDICNKTFSNKWALKKHTNKFHPQDVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811254;
90% Identity: -
80% Identity: -