Hvit029479.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638109.1:930639-936006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.06 4.7 8.7 2.1 1 23 169 192 169 192 0.95 2 17 3.2e-07 2.5e-05 25.3 0.9 1 23 240 263 240 263 0.97 3 17 1.4e-05 0.0011 20.2 0.9 1 23 269 292 269 292 0.97 4 17 0.75 58 5.3 1.1 1 23 298 320 298 320 0.97 5 17 0.082 6.4 8.3 5.0 1 20 346 365 346 369 0.95 6 17 0.0011 0.085 14.2 2.6 1 23 378 401 378 401 0.94 7 17 6.2e-06 0.00048 21.3 1.4 1 23 407 430 407 430 0.97 8 17 0.0012 0.09 14.1 3.4 2 23 437 458 436 458 0.96 9 17 6.7e-07 5.2e-05 24.3 0.6 1 23 464 486 464 486 0.97 10 17 0.00046 0.036 15.4 1.2 1 23 491 513 491 513 0.98 11 17 0.0021 0.17 13.3 0.5 2 23 521 543 520 543 0.91 12 17 3.6e-06 0.00028 22.0 1.1 2 23 567 588 566 588 0.95 13 17 0.00024 0.019 16.3 1.4 1 23 594 616 594 616 0.97 14 17 4.6e-06 0.00036 21.7 2.8 1 23 622 644 622 644 0.97 15 17 0.00032 0.025 15.9 2.3 1 23 650 673 650 673 0.94 16 17 2e-05 0.0016 19.6 3.6 1 23 679 701 679 701 0.98 17 17 0.00018 0.014 16.7 1.5 1 23 707 730 707 730 0.95
Sequence Information
- Coding Sequence
- ATGTCGAATCTAACTTTGTGTCGAGTGTGTTTAGTTGGCGAAGTAAGAATGCAAACACTTAGACGAACTCGGTATCAAGAAATATACGAAAAATTCACAGGCGAAAAGCTCATCATGGGAGATAACCGACCCGATGCCGTATGCTTCCTGTGCAAGTCACTACTACAGAAGTTCTGTGCATTCTTTGAGCTCGCACAAAATTCTGAGAGATATCTCAGCATAGTTCTTGAAAATGGAACTGAGCTAACCCAACTGTCAAACGAGGGACGGAGCATACACAATTTGTTAATATCACCTATCAAGTCCATCACAATCAATATCAAGGAAGAAAATGACATTGTGCCTGTTAAAGTCGAGCCCTTTGAAgagataaataatgatgataatgaacttGAAGACCTTCCTGCAGACACATTAGAAGACACAATTGAAGACTCAGAACCTGATCCGTTTGAAGCGGTGAATGTCACCGTCAAAGCTGAATCCAATACGAGCAAACACATCTTCTCCTGTGAAGAATGCCCGCGTAAATTCAACTGTAACCAAGCTCTGAACTTGCATAAGACAACCGTTCACAAACACCAAAGCTTTAAAAAAGGCGGCGAGATATTCGGTAACCCCGGACATTTAAAAATGCTTATGAGatttcacaataaaaaaattacgccCGACGGCAAAGATAAACTAAGCaagtatataattttaaaggAAGATAAGTACGCTTGTACGGTCTGTGGCAAAGCTTTCAACCAAAAAGGTCATTTGAAAACTCATATCATGTCGTTACACACAAGAGAAAAACTTTACCAATGCACAATCTGTGATAGAAAGTTTGCcgtgaaatataaattaaattcgcATGTGAAAATTATGCATCGCAAGCAAAAACAGTTTAAATGTTCCACTTGCAATGATGTATTCGTTGAGGAGAGGGCTTGCAGAATACACATGGCCACTCATACAGAAGAAGAATGTATCGATGAAAATGAGCATGACTGTGGAGAAAAATTTAAGACGGACGCAGATCAAAAACCGTTTTATTGCACTGTGTGCTGCAAAATTTTTCGAGAAGAGAGCGATCTGAAAAAGCATATGATTTGTAACCACGGTGAAGCAGCCCGTCGGAAACGTTTCTGTTGTGAAATATGCAATCGCAGTTTCGGTTGGAAATCACATCTAAAAACTCACATAATGGCGATACACACAGGCGAGAGGCCATTCTCTTGCAACATGTGCGAGAAAAAATTTGTCCAAAAAAGCTCTCTAAGAGGCCACATGATAAGAACGCACCCTGAACAAAAACCACAAACTTGCGAGAAGTGTAACAAGCAATGCACATCACTCAGCAGTTTGCTAATACATATGCAATTTCACACGGGAGAAAAGCCATTCGCCTGCACTGAATGCGACAAGGCGTTCAAACGAAAAGAGACCCTAAAAACACACATTGCGTCGCACCGTGGCGAAAAATTCCCTTGCAAAGTTTGCTCACTCGAATTCAACACTAAAGCCCAATACCAATCGCACAAGCGACTTCATACCAGTACGCTACCGACCTTTTTATGTCTGAGATGTGATAAGAAATTCATTTTAAGGAGTGATTTGGAGACGCACATTTCTGAAATGCACTCTAGCGTTTTCAATTTCAACGCTACAGAAGTTGTAAAGCAACAGCAGTCAATTCGCGAGGAGAAACTAAGTTGTGACAATTGTAACAAGACATTCCGAGTCAAAAGCGCTCTGAAAAGACACATGGTTAACCACAGTGCAGATAAACCCTTCGCTTGTAGTATATgcaataaatttttcaaaagaaaGCTAATATTGAAGAAACACATGGAAATACACACTGAAGAAAAAAGGTTCGCGTGCGATAGATGTGACAGGAAATTCCATCAGAAAGGCAACTTGACAAACCATATGAGAATTCACTCGGGAGAAAAGCCATTTGTCTGTGACCGATGCGGGTATCAATTTGGGCAGAAAAATCATTTGAAAACTCATATTCTGTTTATGCATAGTTCAGAGCGACCGTTTTCGTGTGAGATCTGTAATAAGACGTTTAGGCTTAGGAGTTGTCTGAGAAATCATCAGCTGGTTCATACTGGGGCTAAACCGTTCTCTTGCgataaatgtgaaaaaaaatatggtagAAAGAGTAAGTTAAAGGCGCATGTCGATAAAATGCACACTTGa
- Protein Sequence
- MSNLTLCRVCLVGEVRMQTLRRTRYQEIYEKFTGEKLIMGDNRPDAVCFLCKSLLQKFCAFFELAQNSERYLSIVLENGTELTQLSNEGRSIHNLLISPIKSITINIKEENDIVPVKVEPFEEINNDDNELEDLPADTLEDTIEDSEPDPFEAVNVTVKAESNTSKHIFSCEECPRKFNCNQALNLHKTTVHKHQSFKKGGEIFGNPGHLKMLMRFHNKKITPDGKDKLSKYIILKEDKYACTVCGKAFNQKGHLKTHIMSLHTREKLYQCTICDRKFAVKYKLNSHVKIMHRKQKQFKCSTCNDVFVEERACRIHMATHTEEECIDENEHDCGEKFKTDADQKPFYCTVCCKIFREESDLKKHMICNHGEAARRKRFCCEICNRSFGWKSHLKTHIMAIHTGERPFSCNMCEKKFVQKSSLRGHMIRTHPEQKPQTCEKCNKQCTSLSSLLIHMQFHTGEKPFACTECDKAFKRKETLKTHIASHRGEKFPCKVCSLEFNTKAQYQSHKRLHTSTLPTFLCLRCDKKFILRSDLETHISEMHSSVFNFNATEVVKQQQSIREEKLSCDNCNKTFRVKSALKRHMVNHSADKPFACSICNKFFKRKLILKKHMEIHTEEKRFACDRCDRKFHQKGNLTNHMRIHSGEKPFVCDRCGYQFGQKNHLKTHILFMHSSERPFSCEICNKTFRLRSCLRNHQLVHTGAKPFSCDKCEKKYGRKSKLKAHVDKMHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -