Hvit015600.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Horisme vitalbata
Gene Symbol
-
Assembly
GCA_951804965.1
Location
OX638095.1:17328467-17337458[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00012 0.0097 17.2 2.5 1 23 214 236 214 236 0.99
2 17 0.011 0.84 11.1 0.7 3 23 244 264 242 264 0.96
3 17 0.00027 0.021 16.1 2.4 1 23 270 292 270 292 0.99
4 17 1.9e-06 0.00015 22.9 1.1 2 23 299 320 298 320 0.96
5 17 0.00076 0.059 14.7 4.9 1 21 326 346 326 348 0.95
6 17 0.00029 0.023 16.0 4.4 1 23 353 376 353 376 0.95
7 17 4.4e-05 0.0034 18.6 1.9 1 23 381 403 381 403 0.98
8 17 4.5e-05 0.0035 18.5 3.1 1 23 409 431 409 431 0.98
9 17 1.8e-06 0.00014 23.0 2.5 1 23 437 459 437 459 0.98
10 17 6.4e-06 0.0005 21.2 0.6 1 23 465 487 465 487 0.97
11 17 6e-07 4.7e-05 24.4 2.6 2 23 499 520 498 520 0.96
12 17 3.1e-06 0.00024 22.2 5.8 1 23 526 548 526 548 0.98
13 17 1.8e-06 0.00014 23.0 0.5 1 23 554 576 554 576 0.98
14 17 1e-06 8.2e-05 23.7 1.0 1 23 582 604 582 604 0.98
15 17 1.2e-05 0.00097 20.3 1.2 1 23 610 632 610 632 0.98
16 17 2.9e-06 0.00022 22.3 2.7 1 23 638 660 638 660 0.99
17 17 0.0003 0.024 16.0 0.5 1 20 666 685 666 686 0.94

Sequence Information

Coding Sequence
ATGGCTGTATGCAGGATGTGTTTAGCTAACAATGTTAGAATGCAATTACTGCCAAGCACGCAGCTAGTGGAAATGTTTGAGTTGATTGCTAATAATAAGCTCGTGACAGAAGATAAGAGACCGGAGTCTGTATGCTACATTTGCTACTCACAGTTAAAGAGATGCCAAAAACTGATGATTGTGTCCCGGAAAGCTGAAAAAATCCTTACACAGCTGTTTTGTAATGGCTTagagATAACACAAGAAGCAGTACTACTTTTGAATGGTGGTACTCCGCTTAGTACAAATATCTCTATACAGCCTGTCTCATACTACAATCTACccactgatgataatgacgtgGTGTACAGCCTCGGTGGTGTCAAACTAGAAGAAGAATACTCCACTGTTTTTGCAGATGACTTTATACAAGAAGAAATTAAGAATGATTTTAGTCTTGGAGATGAAGTTGACTTAGAAGTACCCGCAACAGAaattaaagaagaaaatacagATTTCCTTGAAGAAAGTCTTAGTTTCATTGCATCTAATAACGTTAAAGAGGAAACAGCTGACCAatcttgtattaaaaaaattaagcaccAAAAAACAGGTTCAGTAAGGAAACGAAAGATCAATATTCACTATGGAGGAAAGCCATATAAATGCGACAGATGCAATGAGAGTTTTAGTCGAATGAAGCTCTATAAGGCTcatgtaaaaaaacataaaacaaaaaatctactCGCTTGTAGATTTTGCGACAAAATATTAGCAGATGAGCATGTCCTCAGTCGACATTTGAGAACTCACACTGGAGAAAGGCCTTACACCTGCACTATTTGTAGAAAATCATACTCAGATGGATATGTTTTAAAGAGACATTTCAAGACACATACTGGTGCAAGACCATGTGCTTGCACTGTTTGTGGAAAAACATTTGCTGAGAATAGTGACGTGAAGAAACACATGAGAATTCACACAGGGCACAAGCCCTTCTCGTGCCGTATATGTGACAAGAAATTTTACGAGAACTACCAATTGAGGAATCATATGAACTGTCACGCCGGACAGAAGTTTGACTGCGAGATTTGTGACCGGACTTTTTCAGAACACCACTATCTAAAAAAGCATGTAAGCAGAATGCACACAGCAAAGAATTTTACATGCGAATACTGTGACAAGAAATTCAACGAGAATAACAGATTGCAGAGTCATTTGAAAGTTCATACAGGGGAAAAACCATTTACATGCGACGAATGTAAGAAATCATTTCCTGACAAACGCCGCTTGATTCTGCATATGAAACACCACAGCGGTGATAAACCATTTCCCTGTGACGTTTGTGATAAGAAATTCTTtacaaataacaatttaaagaaCCACAAAAGAACACACACTGATGACAAACTATTCGCATGCGACAGTTGTGACAAAACTTTTACAGTGTTAGATTACTTGAAAAGTCATATGAAAGTTCACGTCTCGAAGAGTCGAGTCGATGCGTATGCGTGTGCCTGCGATCGATGCGGAAAAACATTCTCCGACAAGAGTGTGTTGAAAAAACATATGAGAATTCACACAGGCGAAAAACCATTTGTCTGTGATATGTGTCATAAAACTTTCGTtgaaaagtgtaacttgaaacGGCATATTCGCACTCACACTGAAGAAAAGCCATACAGTTGCGATTTGTGTGATAGGTCGTTCGCTGAAAGTGGAAACTTGAAGACTCATAGACGAGTCCACACAGGAGAAAAGCCATTCTCGTGCGACGCATGTGGGAAAGGCTTTACGCAATCAAGTTCTTTGAAAAAGCACCTTACTACCCATACTGGAGAACGACAGTTCTCTTGTTTAATCTGCTACAAAACATTTACAGCTAAGAACAGCTTGAAGATTCATATGAGGATTCACAGCGGAGAAAAACCATATAGCTGTAACATTTGTAGTAAATCGTTCTATGAGAGCAGTTCATTAAGTAGGCACAAACGGACGCACACTGGTGAAAGTCCTTACACATGTATTGAATGCAACAAATCTTTTAGTAGGAAAACCTATTTGCAACAGCATGTGGCTTTTTGCAAACGTTAG
Protein Sequence
MAVCRMCLANNVRMQLLPSTQLVEMFELIANNKLVTEDKRPESVCYICYSQLKRCQKLMIVSRKAEKILTQLFCNGLEITQEAVLLLNGGTPLSTNISIQPVSYYNLPTDDNDVVYSLGGVKLEEEYSTVFADDFIQEEIKNDFSLGDEVDLEVPATEIKEENTDFLEESLSFIASNNVKEETADQSCIKKIKHQKTGSVRKRKINIHYGGKPYKCDRCNESFSRMKLYKAHVKKHKTKNLLACRFCDKILADEHVLSRHLRTHTGERPYTCTICRKSYSDGYVLKRHFKTHTGARPCACTVCGKTFAENSDVKKHMRIHTGHKPFSCRICDKKFYENYQLRNHMNCHAGQKFDCEICDRTFSEHHYLKKHVSRMHTAKNFTCEYCDKKFNENNRLQSHLKVHTGEKPFTCDECKKSFPDKRRLILHMKHHSGDKPFPCDVCDKKFFTNNNLKNHKRTHTDDKLFACDSCDKTFTVLDYLKSHMKVHVSKSRVDAYACACDRCGKTFSDKSVLKKHMRIHTGEKPFVCDMCHKTFVEKCNLKRHIRTHTEEKPYSCDLCDRSFAESGNLKTHRRVHTGEKPFSCDACGKGFTQSSSLKKHLTTHTGERQFSCLICYKTFTAKNSLKIHMRIHSGEKPYSCNICSKSFYESSSLSRHKRTHTGESPYTCIECNKSFSRKTYLQQHVAFCKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-