Hvit029478.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638109.1:919853-927228[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.2e-05 0.0017 19.5 0.7 1 23 143 166 143 166 0.95 2 21 1.4e-06 0.00011 23.3 3.5 1 23 169 191 169 191 0.97 3 21 6.8e-06 0.00053 21.1 0.4 1 23 214 237 214 237 0.94 4 21 1.6e-08 1.3e-06 29.4 0.9 1 23 243 266 243 266 0.98 5 21 0.0003 0.023 16.0 0.9 1 23 272 294 272 294 0.97 6 21 0.00012 0.0093 17.2 0.3 1 23 309 332 309 332 0.96 7 21 4.7e-07 3.7e-05 24.8 1.5 1 23 338 361 338 361 0.97 8 21 2.4e-05 0.0018 19.4 0.4 1 23 367 389 367 389 0.97 9 21 0.0034 0.27 12.6 0.9 1 23 395 418 395 418 0.94 10 21 0.0014 0.11 13.9 0.7 1 23 441 464 441 464 0.95 11 21 5.6e-07 4.3e-05 24.6 1.6 1 23 470 493 470 493 0.98 12 21 0.00014 0.011 17.0 0.5 3 23 501 521 499 522 0.94 13 21 0.00011 0.0086 17.3 0.7 1 23 535 558 535 558 0.95 14 21 2.1e-07 1.7e-05 25.9 1.1 1 23 564 587 564 587 0.97 15 21 1.4e-05 0.0011 20.1 4.4 1 23 592 614 592 614 0.98 16 21 1e-06 8.1e-05 23.7 1.6 1 23 620 642 620 642 0.97 17 21 0.00011 0.0084 17.4 3.2 1 23 647 669 647 669 0.98 18 21 0.0088 0.68 11.4 0.7 2 22 677 697 676 699 0.86 19 21 0.0044 0.34 12.3 0.8 1 23 705 727 705 727 0.97 20 21 8.1e-06 0.00063 20.9 0.6 2 23 732 753 731 753 0.96 21 21 0.066 5.1 8.6 0.6 1 23 759 781 759 781 0.92
Sequence Information
- Coding Sequence
- ATGTACGAGAAATTCACCGGCGAAAAGCTCCTCATGGAGGATGGCCGACCTGACTGCGTATGCTTCATGTGCAAGACACAGTTGCAGAAGTTCTGTGCCTTCTTTGAGCTTGCTCAGAGTTCCGAGAGAAATCTCACAAGAATACTCCAAAATGGGATTGAGCTAACCCACCTGTCACCTTTCACCAACCGAGGGCATGTCCACAACCTGTCAATGTCACCTGTCAAACACACATCCACCCTCGACGTGAAGGAAGAAGACGTGCCTGTCAAAGTGGAGCTGTTTGACGTAACGAAGAGTAATGATGAAGATGGAGGTGAAATTGATGATCTCCCTGCAGATACCTTCGAGGACTCGGCATCTGATCCTTTAGAAGCTGTCGCAGCGACGGTCAAAGCCGAATCCAACGATATCAAACACATCGTCTTCCCATGCGAGGAATGCCCGCGAAGATTCAACTCTAATAAAGACCTGAACCGACACAAAACATCTGCACACAAACATCACAGCTGCAAGAAATGCGGCGAGACATTCGCCAACCCTGGACACCTAAAAATGCATATGAGATATCACAATAAAGAAATCACATTCAAAAGCAAAGACAAACTGAGCAATTTTATCATTTCAACAGGTCAGAAGTACGCCTGTGTACTTTGCGGGAAAGATTTCACACAAAAAGGACATCTGAAAACTCACATAATGGCAATACATACAGGAGAAAGACCTTTTCCATGCACTATTTGTGATAAAAGATTCGTACAGAGAAGCAATCTAACCGCGCATATGAAGACAACTCATACTGATGAGAAACCATTCACTTGTTCTACTTGCAATATCGTTTTCCATGATGAGAGTGAATGGCGAAAACATATGGTAATACATAGCGAAGTGGATGAAGATATTCAAATAGTTCGCGGGAAACCGTTCGCTTGTGGAATGTGTAGCAAGACATTTGCAATGAAGGCCTATCTGCAGTCCCATATAATGTCTATGCATACAGGAGAAAGACCATTCCCTTGCAATTTGTGTGATAGGAAATATACACAAAAAAGTCATCTCAGAGCGCATATGAACGTTGCTCACGCGGTAGAAAAACCATTTGCATGCAACGATTGCGAATACAGATTCGATGATGAGGAAGAATTGAGAAGGCACGCGAGAAAACACGCTGAACAGAAGCCCTATTCTTGCAGTGTTTGCGGAAAGATCTGCCAAGCGGAGAGCGATTTGAAAAAGCATACGATTCTAAACCACGGGGAAGCAGCATTAACGCGTGAAGGAAAGCAATTGAGCATTGATCTCAACACGGGGAAAAAACGCTTCCCATGCGAAATGTGCAGTCGCACATTCGGTTGGAAATCGCATCTGAAAACTCACATAATGGCGATACACACCGGCGAAAGACCATTTTCATGCAACATGTGTGATAAAAAATTCGTCCAAAGAAGCTCCCTACGAGTCCACGTTAGAACAACACACACAGAACAGAAACCTCTCGCTTGTGACActtgcaataaagtgttccaaGCTGAAGCTAATTTAAGAAAACACATGATAATTCATCACGGAGAAACGACGGATCAAGACGATAAGGGAAAGAAATTCACTTGCGCAATGTGCGGCAAATCTTTCGGTTGGAAATCACATCTGAAAACTCACATAATGGCGATCCATACAGGAGAAAGACCGTTCGCTTGTAGCGTTTGCGATAAACGGTTCGTGCAACGAAGCTATCTGAAAGCTCATATGAAGACAAGCCACTCTGGATTAACCTTTACCTGTGATAGGTGCAACAAACGATGCACTTCAGCTAGTAACCTTCGTATCCACATGCGATTCCACACAGGAGAAAAACCATACGCATGCCACAAATGTGACAAAGCATTTAAAAGGAACGACAGTCTCAAAATTCACTTGGCTTCGCACCGCGGCGAGCAGTTCTCATGCAAAGTTTGCTCCCTGAAATTCAACAACAAAACTCAATACCAATCACATATGAGACTGCATACCAGTTCTTTGCCCCCGTTTCTATGCCTAAGATGTGATAAGAAGTTCAGTTTGAAGAGTGATTTGGAATTACATAACTCCGAAGCTCACGCTAGCGATATGCCGTTCTCTTGCGATTCTTGCGAGTTGAGATTTGACGACAAAAACGTTTTAAAGCGTCATCAGTTGCTCCACGAAGAGAAACTCAGTTGTGATATCTGTAACAAAACATTTTACGCGAAAAGCGCTTTGAGAAGACACATGTTCATACACAGCACGGAGAAACCATTCGCTTGTATCATTTGCAACAAATTTTACAAACAAGAACGTATATTGAAGAAACACATGGAAATACATACCGAAGAAAAACAGTTCGCGTGCGATCAACCTAAGCTTGATTGGAGACAAAGAAAGTGGGAACCGAAGTTTGATTGGAGACAGTTCGAAAAGTGGGAACCGAAGTTTGATTGGAGACAGGAAAAGAGGGAACCGAAGTTTGATTGGAGACAGTTCGAAAAGTGGGAATCGAAGTTTGATTGGATACAGGAAACATGTGAACCGAAGTTTGATTGGAGACAGTTCGAAAAGTGGGAACCGAAGTTTGATTGGAGACAGGAAAAGTGGGAACCGAAGTTTGATTGGAGATAG
- Protein Sequence
- MYEKFTGEKLLMEDGRPDCVCFMCKTQLQKFCAFFELAQSSERNLTRILQNGIELTHLSPFTNRGHVHNLSMSPVKHTSTLDVKEEDVPVKVELFDVTKSNDEDGGEIDDLPADTFEDSASDPLEAVAATVKAESNDIKHIVFPCEECPRRFNSNKDLNRHKTSAHKHHSCKKCGETFANPGHLKMHMRYHNKEITFKSKDKLSNFIISTGQKYACVLCGKDFTQKGHLKTHIMAIHTGERPFPCTICDKRFVQRSNLTAHMKTTHTDEKPFTCSTCNIVFHDESEWRKHMVIHSEVDEDIQIVRGKPFACGMCSKTFAMKAYLQSHIMSMHTGERPFPCNLCDRKYTQKSHLRAHMNVAHAVEKPFACNDCEYRFDDEEELRRHARKHAEQKPYSCSVCGKICQAESDLKKHTILNHGEAALTREGKQLSIDLNTGKKRFPCEMCSRTFGWKSHLKTHIMAIHTGERPFSCNMCDKKFVQRSSLRVHVRTTHTEQKPLACDTCNKVFQAEANLRKHMIIHHGETTDQDDKGKKFTCAMCGKSFGWKSHLKTHIMAIHTGERPFACSVCDKRFVQRSYLKAHMKTSHSGLTFTCDRCNKRCTSASNLRIHMRFHTGEKPYACHKCDKAFKRNDSLKIHLASHRGEQFSCKVCSLKFNNKTQYQSHMRLHTSSLPPFLCLRCDKKFSLKSDLELHNSEAHASDMPFSCDSCELRFDDKNVLKRHQLLHEEKLSCDICNKTFYAKSALRRHMFIHSTEKPFACIICNKFYKQERILKKHMEIHTEEKQFACDQPKLDWRQRKWEPKFDWRQFEKWEPKFDWRQEKREPKFDWRQFEKWESKFDWIQETCEPKFDWRQFEKWEPKFDWRQEKWEPKFDWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -