Hvit010949.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638092.1:27962321-27964418[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-07 0.00015 22.3 0.0 1 40 14 53 14 56 0.89 2 2 3.6 1.9e+03 -0.4 0.0 18 28 293 303 292 303 0.91
Sequence Information
- Coding Sequence
- ATGGCTCGCTACAAATGTAAAGGGATTCGGGGTAATTGGACTGAAGACAACATGAAATTAGCAATATCTGCTGTTAAGCGAGGAGTTAAGAAAGTTTACACAGCTTCAAAAAAATTTGACATACCAAGGCGGACTTTAAGAAGATATTTAGAAGAAAATAAAGTCGAAAAATTGGCCTTGGGAAGAAAACCACTTCTAAGCATTGACCAGGAAAAGGATTTGACAAAACGAATTATACGTCTGTGTGAAGTAGGATATCCACTAACACAACGTGTATTACGTACATGTGTAAAAACATTCTGTAATGCGAACAGCATTCCAGTAGAAACCAGAGGCTTAATGATTGGACGAGACTGGTTGAGAGGATTTTTAAAGCGTCACAAGAACATAAGTAGACGAAAAGCACAAAATCTAAACCCTGCAAGAGCGCAAAAGCTTAATAAAACAGTAGTTATGGACTACTTTGATAAACTTAAGAAGTTAATGATTGATAACGACTTACTCAACAAACCTGAACgtattttcaatatagatgAGAAAGGTTGTCAATTGAAATTACACAAGGCTCCACAAGTATTAGCTCAACGAGGTGTAAAGAGAGTACATTTAGTGGCAGCTGAACATGGTGAAAATGTTACTGTTGTTTCATGTGGCAACGCTTTGGGTCAAGCGATTCCTCCAATGCTTTTGTTTAAAGGCAAAAGAATGAAACCAGAGTGGTTAGATTCATTGCCTACTGGATCCGAAGCCCAGATGACCCCTAAAGGGAGTATGAATACAGAAACATTCGTCAACTGGATTCACCATTTTGCAAAATATAAACTATCCGGTCCTTGTGTCCTGTTTTTTGATGGAGCTAAATGTCACTTGGATTTTTCTATAGTTGAAGCAGCCGATAAATTTGAtatcaagcttttttgtctgCCCAGCAACATAACGCACGAATTGCAACCGATGGATAAATCAGTGTTCAGATCTTTTGAGTACTTTTGGGACGAAGAGTGTGGGACAAAGCTGCAACACCCACAAACATCAAAGCTGGATTTGAAGCTACTGGAATTTACCCACCCAGAGCGAATCCCAAATGAAACGTATGCTCCAAGTATACCAACTCACAACCCCATAACATCACCTGTGCCTTTATCTTCTGAAAATGATGATACTGACAACACCGATGCCAGTGAGAGTATTTTGACTGAACAACATGATTTTACAGAGAACCACGATGACAATATCCCTGCACCTACTCTGTGTCGTCCTGACCCAAATGATAGAGATGAGAACCCTTCGCTTACTGAGCGTCCTAGTTCAAATGAATGTGGAGAAAATCCTCCGATTGCTGAGCGTCCTGTTTCAAAAAATAATGACGACAACTCTCCGTATCATGCTCAGCGTCCTTCAAACGATAGTCATGGCAATATCCAACCATACAGAGGAGACGACAGTAGCCTTCTTTCTACACAGCCCTCtgattctatttttaatttcgGCAATAATGAAAGCCCTCTTACTCATTTACCTCAGAATATGGGGGATACACATATTAGGCAAGAGTCAAGTCAAGTCATATCTTTAAAAGCTACTGATTCAAACACTTCATTCCAATCTATGTTGAAAACTCCAGAAAAGATGTCAAGCCCCAAAACTGCTCCTAGGAAGAAAGCTTTTAATAGCCTTGCTCAAGAACTCACCAAATCAGCTTTTACAGATAAAGAAAGTATGCCAGGGCCATCCACAAGCTGCCctcaaaaacgaaaacaaagCGTTTCACAAAAAGCTAAAGCACGAGGCCATAAAAGACCTGTATCACCGAAAAAGACTGCTCCAAAACAGCCACGTGCAAAAGGAAAATCTCAAAACTTGCGTGCTGATGCAGAGTCCTGGTACTGCTTCGTTTGCGACGAAGACAGAATGGACGACATGAGGCAATGTTTTGAATGTGGAACCTATGTCCATGAGGAATGCGTTGGATTAACTGTAAACGACAaagaaaagtttgtatgtaccAAATGTAGTGAAGACTGA
- Protein Sequence
- MARYKCKGIRGNWTEDNMKLAISAVKRGVKKVYTASKKFDIPRRTLRRYLEENKVEKLALGRKPLLSIDQEKDLTKRIIRLCEVGYPLTQRVLRTCVKTFCNANSIPVETRGLMIGRDWLRGFLKRHKNISRRKAQNLNPARAQKLNKTVVMDYFDKLKKLMIDNDLLNKPERIFNIDEKGCQLKLHKAPQVLAQRGVKRVHLVAAEHGENVTVVSCGNALGQAIPPMLLFKGKRMKPEWLDSLPTGSEAQMTPKGSMNTETFVNWIHHFAKYKLSGPCVLFFDGAKCHLDFSIVEAADKFDIKLFCLPSNITHELQPMDKSVFRSFEYFWDEECGTKLQHPQTSKLDLKLLEFTHPERIPNETYAPSIPTHNPITSPVPLSSENDDTDNTDASESILTEQHDFTENHDDNIPAPTLCRPDPNDRDENPSLTERPSSNECGENPPIAERPVSKNNDDNSPYHAQRPSNDSHGNIQPYRGDDSSLLSTQPSDSIFNFGNNESPLTHLPQNMGDTHIRQESSQVISLKATDSNTSFQSMLKTPEKMSSPKTAPRKKAFNSLAQELTKSAFTDKESMPGPSTSCPQKRKQSVSQKAKARGHKRPVSPKKTAPKQPRAKGKSQNLRADAESWYCFVCDEDRMDDMRQCFECGTYVHEECVGLTVNDKEKFVCTKCSED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267117;
- 90% Identity
- -
- 80% Identity
- -