Hvit026277.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638105.1:10034909-10035604[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-13 3.5e-10 40.3 0.1 1 40 14 53 14 58 0.95
Sequence Information
- Coding Sequence
- ATGGCTCGATACAAACGGAAAGGGATTCGGGGTAACTGGACTGAAGATAACATGAAACTAGCTTTATCTGCTGTTAGACGAGGTATAATGAAAATATATAGAGCTGCAAAACATTATGAAATACCTCGGAGAACTTTAAGACGATATCTAGAAGAAAATAAAGTAACAAAATCGACCTTAGGGAGAAAGCCAATACTAAGCCTTGATCAAGAAAATGATTTAGAAAAGCGAATAATTCGTCTGTGTAACGTGGGATATCCACTCACCCAACGTGTACTGCGTACTTGCGTAAAAACCTTTTGTACTGCAAACAATATTTCTGTGGCACAAAATAGTTCGATGATTGGACGAGATTGGCTAAGAGGATTTCTAAACCGACATAAGAACATCAGTCGACGAAAAGCGCAAAATCTCAACCCCGCAAGAGCGCAGAAGCTTAATAAAGTAGTCGTTATGGACTATTTTGATAAACTGAAGAAAAtaatggctgataatgatgtaCTTAACAAACCAGAGCGTATTTACAATGTCGATGAAAAAGgatgtcaattaaaattacaCAAGGCCCCACAAGTTTTAGCTCAACGCGGTATAAAAAGAGTTCATATCGTAGCATCGGAACACGGAGAAAACGTAACTGTTGTTACATGCGGAAACGCTTTGGGTCAAGCAATCCCACCCATGCTTTTGTTATAA
- Protein Sequence
- MARYKRKGIRGNWTEDNMKLALSAVRRGIMKIYRAAKHYEIPRRTLRRYLEENKVTKSTLGRKPILSLDQENDLEKRIIRLCNVGYPLTQRVLRTCVKTFCTANNISVAQNSSMIGRDWLRGFLNRHKNISRRKAQNLNPARAQKLNKVVVMDYFDKLKKIMADNDVLNKPERIYNVDEKGCQLKLHKAPQVLAQRGIKRVHIVASEHGENVTVVTCGNALGQAIPPMLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -