Hvit023549.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638103.1:991730-999239[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-11 1.2e-08 35.4 0.0 4 39 143 179 140 183 0.90 2 4 7.8e-11 4e-08 33.7 0.3 2 39 195 232 194 235 0.92 3 4 5.3e-15 2.7e-12 47.0 0.2 2 45 250 294 249 294 0.96 4 4 4.9e-17 2.5e-14 53.6 0.0 1 45 301 346 301 346 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGCCCCGGAACTGCTGCCGTTAAATGTGAGccactctctgatgaagaagaCAGCCGTCCCCAGTTACCTGACCTCTTCCTCAATAACACGAGCCCCGAGGTCCTGGAGGAGCTGGCCCCACTGGCGCCAGCCGGGCCCGCGGCCACCCCCGTCTGCATCAAGCAAGAGCCGGCGGACACTGCGCTTAACCTAGAGATCCTGGAGTCCGCTCCACATAGCACGGGCTCTATATTGGAGAGGCACATGGCGATATTGAGGTCACCAGAAGAGCCCAACTCTGCCAACTTCATGCCGCTACGAACAGTCAAGGATGAGCCAACTTCTGAAGAGCAACAGCAACATAGCAGCGATGACCTCAGCGACTCGTGTGGGCTGGCGGAGCCCTCGACGCGGGGGAGTCCTAAGACCTGGAAGCAGCAGGACATGGACAACGCACTGGATGCGCTCAGGAATCATAACATGAGTTTAACGAAGGCATCGTCAACGTACGGCATCCCGTCGACCACGCTCTGGCAGCGCGCGCACAGGCTCGGCATCGACACTCCGAAGAAGGAAGGCGCCGCCAAGTCCTGGAGCGAGGCGGACCTGCGCGGCGCCCTGCACGCGCTCAGAGCCGGCGCTATATCCGCCAACAAGGCCAGCAAGGCGTATGGGATACCGAGCAGCACCCTGTACAAGATAGCCCGGCGCGAGGGAATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGGTGGCGTGGCGGCGCGGCGACCTGGCGCGCGCGCTGGCCGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGCGCCGCCGCGCAGTACGGCATCCCCACCGGTACACTATATGGCCGCTGTAAACGAGAAGGCATAGAATTATCCCGATCAAACCCTACACCTTGGTCTGAAGACGCCATGGGAGAGGCACTGGATGCTGTAAGGATTGGTCAAATGTCTATCAACCAAGCGGCTATTCACTTCAACTTGCCATATTCTTCTCTGTATGGAAGATTCAAGAGATGCAAGTATCAAACGCAGCAAGAAGTACAGAACCCTCCTGAATTGGTCCACAATCAAGAGCTGAGCTACTACCATCAAATGCCGATGTACGCAGAGCACGAGCAGCCAGTACAACATCCGTACCCTCACAACGAGTTCGTCCCGGACCCATCTCCGCATAACAATATGATACTGCACGGGCCTTACTCGGGGCAGACGATGTATTACAACCAGAACTTTAGCAGCATAGCCACCAGCTGA
- Protein Sequence
- MSCPGTAAVKCEPLSDEEDSRPQLPDLFLNNTSPEVLEELAPLAPAGPAATPVCIKQEPADTALNLEILESAPHSTGSILERHMAILRSPEEPNSANFMPLRTVKDEPTSEEQQQHSSDDLSDSCGLAEPSTRGSPKTWKQQDMDNALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALAAIRAGRASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALDAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQTQQEVQNPPELVHNQELSYYHQMPMYAEHEQPVQHPYPHNEFVPDPSPHNNMILHGPYSGQTMYYNQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -