Basic Information

Insect: Hoplodrina blanda
Gene Symbol: -
Assembly: GCA_949316365.1
Location: OX438563.1:9146000-9158785[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.91 63 4.9 1.8 6 20 12 26 6 28 0.86

2 14 0.09 6.3 8.0 1.1 3 20 35 52 34 54 0.94

3 14 0.77 54 5.1 0.5 1 12 209 220 209 229 0.83

4 14 0.32 22 6.3 0.1 1 19 357 375 357 375 0.98

5 14 0.00021 0.015 16.3 0.2 1 23 382 404 382 404 0.98

6 14 0.0026 0.18 12.8 2.6 1 23 422 444 422 444 0.99

7 14 2.8 1.9e+02 3.3 1.0 1 22 469 489 469 490 0.70

8 14 0.00024 0.017 16.1 0.5 3 23 498 518 496 518 0.96

9 14 0.00086 0.06 14.4 2.3 1 23 534 556 534 556 0.98

10 14 1.6e-06 0.00011 23.0 4.5 1 23 562 584 562 584 0.98

11 14 0.004 0.28 12.3 6.4 1 23 590 612 590 612 0.97

12 14 9.9e-06 0.00069 20.5 0.4 1 23 618 640 618 640 0.98

13 14 0.00048 0.033 15.2 1.1 1 23 644 666 644 666 0.98

14 14 0.00026 0.018 16.0 0.3 1 23 674 697 674 697 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.91	63	4.9	1.8	6	20	12	26	6	28	0.86
2	14	0.09	6.3	8.0	1.1	3	20	35	52	34	54	0.94
3	14	0.77	54	5.1	0.5	1	12	209	220	209	229	0.83
4	14	0.32	22	6.3	0.1	1	19	357	375	357	375	0.98
5	14	0.00021	0.015	16.3	0.2	1	23	382	404	382	404	0.98
6	14	0.0026	0.18	12.8	2.6	1	23	422	444	422	444	0.99
7	14	2.8	1.9e+02	3.3	1.0	1	22	469	489	469	490	0.70
8	14	0.00024	0.017	16.1	0.5	3	23	498	518	496	518	0.96
9	14	0.00086	0.06	14.4	2.3	1	23	534	556	534	556	0.98
10	14	1.6e-06	0.00011	23.0	4.5	1	23	562	584	562	584	0.98
11	14	0.004	0.28	12.3	6.4	1	23	590	612	590	612	0.97
12	14	9.9e-06	0.00069	20.5	0.4	1	23	618	640	618	640	0.98
13	14	0.00048	0.033	15.2	1.1	1	23	644	666	644	666	0.98
14	14	0.00026	0.018	16.0	0.3	1	23	674	697	674	697	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGGAGTTGAATTGTCCTCTTTGTTGCCATACAACTTTTAATTCTAAACAATCTCTACTTGAGCACTTGACGAATGTCTTAGAGAATGTATTTTGTCCTGTTTGTAACCAGAAATGCACTTCATTACCACACCTTGTTGAGCATTTGTCTCAGGAGAATTGTCAACCCGTTAATAATGTACATACTATTGTATTTGAGCGCCAATCAAATGAGAACGATATTGGAAATGTGTCAGTTGTTGGAAATTCTGAAATTAAAGTATATCAGAATGaaataaataccAATGATGGGAATCAGTTTACAACGGAACAAACATACGAAGCTCATGTGGACCCAAATGAGGCCAACAAAATGTATGTGGAACTATTTAGTAAAGAGTTAAAGCCATGTCTTCAGACACGGGAATTTAAACTGGTGAGGGAAAATGGGGAGAGCCGATACATGATCGTCACTCAAGAGGACGGCGACTCAAACGCAGGAAGCACTattgtaacaaaacaaaatgttgaTGGAACCATATCTCTGACTACAGTTAAAGATTCTGAGGATTTAATTATACCAGATAATATACAGGAAAATCAGGAGGAAAATCAGGATGATAATCAGGAAGAGATCTACAGCTGTAATACATGCAAAGTGTCATTCTCATCTGTAATTGAGCACATACAGAACTACCATAATGATCAGGATGTTGTTGTTGAGgaGCCAATCGAAGAGGGCCAGGGTGAGATAATGCCTGATTACGAGCCAATGGAGAATGAAGACACATTATTGtcgacagacaaacagactcCACGGCGCGTCATCACCGATAACGGCGATATTGTCGAGGAACCAATCATCACTCCGGATCCATTGGAACAAACACAAACACCTGCACCAGTTGAAGAGAAAAAAATGGAAATAcgcgtggccccgaaacgttaCTTGCAAGTAGACAAAATTTGCGACAGTGTCATCAAAGATGCGATCCAGACTGACTCAAAAGatAAAAGCGGTCCTTACCACAAGGTTATCGTCAAAGAAGTGCCGACGGACAGCGGGTTCTCCATCAAAATGTACCAATGCCTTGCCTGTGACACATCCGTCACCAATTTGGACGAATTTAAAGTCCATCCCTGTAAAATATtAAAATACCCGTGCCTCTACTGTCCTGTGGCGTATGAAAACCCGAAATCTTTGTGTGCACATATGAAGGCGCACAAAGTTCGTTCAGGCATTTACAGAGATCCTATCGTCACTGGACCTGTATCATACCAATGTGCTATATGCTGCACCGTCTTCCCAACTAACAAGTCTTTGAAACTACACAAACGGATGCACGACCCAATTAAATCGCGTCCCATAGAACTTCCAGTAGAAAACACAGACGGTTCAGTAGTGAATGAAGACAGATACCGTTGTGGTATCTGCCACAAAATGATCCCGATGGACTACAGGACCATCCATCAGAACTCACACAAAACCTCAGAGAAAATGAACTGCGGTATTTGTAACAAGAAGTTCACGTCTATGGAATATCTGGAAATGCATACTAACGTACATAATGTGGAAAAGGCGCCAATGAGCGATCAAGATAAAAGCCTACCATACAGTTGTTTATATTGCAACAGAAGATTCGCTCGGCCGCACGAGAAGGTGAAACATGAAAGGATACATACAGGTGAGAAGCCCCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACACTGCACATGCGCACGCACACCGGCGCGCGACCGTACGCCTGCCAGCACTGCGGCAAgagGTTCAAAGCGCACAGCGTATACAACCACCATCTGCTGACACACTCTGAGGTGCGCGCCTACAAGTGTCCGTTCTGTCCGAAAGCGTTCAAGACGTCCGTACAACTAGCCGGACATAAGAACTCGCATACCAAACCATTTTCTTGCCAACATTGCAATAGGCCATTCGCATCTCTATACGCGGTACGAGTACATACAGAAACGCACTCGCGTCAGAACAACCTGAAATTCTCGTGTGAACTATGCGGTGCCAGCTACGCCAGAGCATTCGCACTGAAGGACCATATCAAACACGCGCACAGTGAAAATGAATCGTCGCAGTCACCTTCACGGACGattCCTGCAGAAGAAGATTGGATGATAAAAGATAACGCGGATACGGATGGGATTCCGGCGCTCAATAAAGATTTGACGCATGAGATCGACCTGGGAATAAGTGCCAACGAACTAATAGTTCCTTAA
Protein Sequence: MGGQELNCPLCCHTTFNSKQSLLEHLTNVLENVFCPVCNQKCTSLPHLVEHLSQENCQPVNNVHTIVFERQSNENDIGNVSVVGNSEIKVYQNEINTNDGNQFTTEQTYEAHVDPNEANKMYVELFSKELKPCLQTREFKLVRENGESRYMIVTQEDGDSNAGSTIVTKQNVDGTISLTTVKDSEDLIIPDNIQENQEENQDDNQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPIEEGQGEIMPDYEPMENEDTLLSTDKQTPRRVITDNGDIVEEPIITPDPLEQTQTPAPVEEKKMEIRVAPKRYLQVDKICDSVIKDAIQTDSKDKSGPYHKVIVKEVPTDSGFSIKMYQCLACDTSVTNLDEFKVHPCKILKYPCLYCPVAYENPKSLCAHMKAHKVRSGIYRDPIVTGPVSYQCAICCTVFPTNKSLKLHKRMHDPIKSRPIELPVENTDGSVVNEDRYRCGICHKMIPMDYRTIHQNSHKTSEKMNCGICNKKFTSMEYLEMHTNVHNVEKAPMSDQDKSLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACQHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHSRQNNLKFSCELCGASYARAFALKDHIKHAHSENESSQSPSRTIPAEEDWMIKDNADTDGIPALNKDLTHEIDLGISANELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00273859;
90% Identity: iTF_00809442;
80% Identity: -