Basic Information

Insect: Hoplodrina ambigua
Gene Symbol: -
Assembly: GCA_949774945.1
Location: OX458994.1:1938220-1952987[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.044 3.3 9.0 1.4 1 23 203 226 203 226 0.95

2 14 0.0091 0.67 11.1 0.2 2 23 319 341 318 341 0.91

3 14 0.096 7.1 7.9 0.3 2 20 379 397 378 399 0.89

4 14 0.51 38 5.6 0.9 1 20 676 694 676 696 0.90

5 14 0.0013 0.099 13.7 1.5 1 23 706 728 706 728 0.93

6 14 1.3 98 4.3 1.3 2 23 734 755 733 755 0.95

7 14 3.1 2.3e+02 3.1 0.8 1 23 776 797 776 797 0.76

8 14 7.4 5.5e+02 2.0 9.8 2 23 834 855 833 855 0.95

9 14 0.00093 0.069 14.2 0.3 2 23 871 892 870 892 0.96

10 14 5.4e-07 4e-05 24.4 2.7 1 23 898 920 898 920 0.99

11 14 0.00076 0.056 14.5 2.6 2 23 926 947 925 947 0.96

12 14 0.04 2.9 9.1 4.4 2 23 954 976 953 976 0.96

13 14 4.9 3.6e+02 2.5 0.2 1 20 983 1002 983 1002 0.89

14 14 0.00035 0.026 15.6 0.4 3 23 1015 1036 1014 1036 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.044	3.3	9.0	1.4	1	23	203	226	203	226	0.95
2	14	0.0091	0.67	11.1	0.2	2	23	319	341	318	341	0.91
3	14	0.096	7.1	7.9	0.3	2	20	379	397	378	399	0.89
4	14	0.51	38	5.6	0.9	1	20	676	694	676	696	0.90
5	14	0.0013	0.099	13.7	1.5	1	23	706	728	706	728	0.93
6	14	1.3	98	4.3	1.3	2	23	734	755	733	755	0.95
7	14	3.1	2.3e+02	3.1	0.8	1	23	776	797	776	797	0.76
8	14	7.4	5.5e+02	2.0	9.8	2	23	834	855	833	855	0.95
9	14	0.00093	0.069	14.2	0.3	2	23	871	892	870	892	0.96
10	14	5.4e-07	4e-05	24.4	2.7	1	23	898	920	898	920	0.99
11	14	0.00076	0.056	14.5	2.6	2	23	926	947	925	947	0.96
12	14	0.04	2.9	9.1	4.4	2	23	954	976	953	976	0.96
13	14	4.9	3.6e+02	2.5	0.2	1	20	983	1002	983	1002	0.89
14	14	0.00035	0.026	15.6	0.4	3	23	1015	1036	1014	1036	0.95

Sequence Information

Coding Sequence: ATGTCGGAGACATCGAGAAAAAGATCCAGGAAGTCGAAATTAGTGCCTCGACAGATTACTGTGAGTGAAGATGAATTTGATATTGAATTACAGATTCCACCTGCAAAACAGCTGAAAACTAAAagacaatacaataaaaaagttaaCAAATCACCAGAGCCAACTCCAGAACCAGAAGAAGAGTACGACACAAGCGTCTTAAAGAAAATTAACGCTTCTGCTAAAGAAGATACggaacaaaaatcaaaatcacCAAGAAAATTTGAAATCAATATTGAAGTAGAGACTTGCGATGATGAAGAAGATGTTGACAAAAAGTTTGAAGACTACGTAATACATGACAAAGAAACTTTGAAGAAACCTGAAACAATTTGTCCGATACCAATAGTACTGACCCGTGACATCGTATTAAAAGCAGCCGATGAAATTCTCAAAACATCAACCAACATCGCTGACAAAATCCTAAACATCAATGTTAGAAACACAATAGGCCATGAACAACCACAGATTTTGAACCCGGGATGGCTTGAGATCCGAATACAAGATGCTTTAGAGGAATGGAGAACGTGGCAGTTCCGGAGCTTCCACAGAGAAGATCCGCTGTTCTATAAATGCTATATCTGTACAAGATCATATTGGTATCTTTCAGAATTCCGGGATCACATGTCTGAGACACATCCCAATGATGTTTTCGTTTCGATAGGCCTTGAGAAGTATGAAATGCATGAAGCAAATGTGATAGCGTACCATAAGAAGTTAATTGTGATCAAAGATATTTACACTCCGGGTCTCTGTTACCGATGCGGTAAGGACTACAATGCTCATGAGCTGGATTTAAGGCAGCAAAGACGGTACTACATTAGCGAAGgctgttccaaacattttttcagTTGCATGGGTTTACGGGACCATTTTCCATGGTGTATAGTATGCAAAGAACATAATAAACCAATCAAATGTGAAATTTGTAAATCGAGATTTGATACAGAAGACGATTTGACCGACCATTTAGTATTATCCCACTCAGTTCGGTCAGACATCCCAATAATGGTACGCTATAAATACTGCAAGGTGTGTGAACAACGCTATAGCTGTGGCTTTTTGCACAAATGTGACGATGAGTGCGCTTATTTGGAGTGTCCGCACTGTTCAATGAGGTTTTCAAGTACAAAAGTCTTGGATAGTCATTTGGAGAGATCAATTACAGCGTACCAATGTGAAATTTGTCAAGTGATTATAGAACATGGTTGTCAGAAATATAATCATATGTTAGAACACACGGACAAGTATATGTTAGTGAAGAAGTGCGTTGAATGTGAAGGATTGAAAGTGTttcttagtaataataatgCGTTAGCTCATCGGGCATTGAAACATGAGGACAAAGATGAAAAACAACCAAGTACTTTTCCAAatATTTTAATACCGTCGTCTTGTCTTGGGAGTATAGCAAAACCTGAAACAATACCAACGAACCAAACGGTACCAGAAGTACAAGACTTGGTATCGATCAGTGAAGACTCGATACCAGAGAGCGAAGGATCGGTACCAgcttttcaaaaaaaattgatggAAGAAGACTATGAATCGGAAACAGAATTTGCAATGGGAAACGTTAAAGTTAAAGAAGAGCCAGTAGACCCAGAAGTGCCAGAAAACTCAGAAGGTCCAGAAGACTCACAAGATAGTCAAAGACTGGTCATAAAAGAAGAATTTGAAGAAGTTGAGAATGAAATATTCATTCCAGAATATCAAACAAAAGACTTTGAACACCAAATAAACGTGAAACAAGAAGTAAAAGAAGAACCAGAAGAGTACGAAGAAGATATTATAAAACTGGACTTCGATATAGaagatttattaataaagcaagaatcagcagaagaagaagaagactacaTTCTGGTAACGTCAGACGAAAGTCAAGAGCAAGACAATGATGAGAATTTACAATCACCAGAAcagaagaaaaaagaagaatCCGTTTCAGAAGCAGACATTGAAAGCAAGAAGCACAAAAGATCATACCGATGCTCCGTTTGTGGGTACACAGCAAACCACAGACTATACAGAACACACATGGAATATGATTGTGGCAAAAACTCGAAAAAGAATTACACATGTACGAAATGCGATAAAAGTTTCGTGtcattaaagaaatatttagtaCATTTTGCAGAACATGGTTTCAAGCACCTCTCGTGTCCTCGATGTGTAAAACAATTCGGTACCTACTCAATTTTAGCTCAACACTTCCATACGCATGTGAAGCAGAATTTCATCCGTGTGAAACTCATAACGTCTTCTGGGACGTCAAAACCTGATCATCAGTGTAGGATATGCGGGGAGACAGTTgagataaaagattttttcaaacattGGGAGTTGCATTTGACTGATCGGCCTGTTGATCCGGTTGAAGTTGAAAGGCCTGCTGAGGATAAAATGCATGAGATGAAGATTAAGGAAAGCATTGCTCGCTTGTCGAAACAGCCAAAAGAATGCAACCACTGTCATCATCGATTCAAGCGTATAAACGAATGCAAGCGCCACATCATTGAACATTTGCTGGTTGACGCCTACAAACACAGACTTATCTTCAAAGTACTGCGTTGCCAGATCTGTGAAATCGGTTTCAATACACCGGAGAGATACAAGCAACACATGAGGGACCACGCATCTCTACCAGTGTATAAGTGTGAATTGTGTGATCGTACATTCAGTGATTCTAGTAACTTTACAAAGCACAAAAAAGTGCATAATTTGAAAGTGCTTGTGTGTGATCTGTGTGGTAAAAAGTTTCAATGTAAATCTTCTTTGGAGAAGCATATGgagAAACACCAGACTACGGAACCAATAACTTGCAAgttatgtaacaaaatattCTACTTCGAAACCTGTTACCGACGTCACGTACGATATTTCCATGAAAAAGCAAATCTAGGATTTCGTTGCATTATTTGTAATGAAAGATTTGATAACTTAAAGTTGAAATGGGATCATATGTGGGAAGTACACCAGGAGAGGAAGCAGAAAGCTGACTGTCCCATATGCCATAAGTCTTTTAGGAAGTATGCCGACGTCCGTGCCCACGCCAGGGCAGACCATGGCACGGAAATCTCCGTGCTAAGTCTTAAGGAAGGTACAAATACTACGATTAACatcaataagtatttaaaacagCCACCTCTTGTTCAAAAAGTTAGGAGAGTAGAAACTCTAGTTGTTTATGATTCGGATTGA
Protein Sequence: MSETSRKRSRKSKLVPRQITVSEDEFDIELQIPPAKQLKTKRQYNKKVNKSPEPTPEPEEEYDTSVLKKINASAKEDTEQKSKSPRKFEINIEVETCDDEEDVDKKFEDYVIHDKETLKKPETICPIPIVLTRDIVLKAADEILKTSTNIADKILNINVRNTIGHEQPQILNPGWLEIRIQDALEEWRTWQFRSFHREDPLFYKCYICTRSYWYLSEFRDHMSETHPNDVFVSIGLEKYEMHEANVIAYHKKLIVIKDIYTPGLCYRCGKDYNAHELDLRQQRRYYISEGCSKHFFSCMGLRDHFPWCIVCKEHNKPIKCEICKSRFDTEDDLTDHLVLSHSVRSDIPIMVRYKYCKVCEQRYSCGFLHKCDDECAYLECPHCSMRFSSTKVLDSHLERSITAYQCEICQVIIEHGCQKYNHMLEHTDKYMLVKKCVECEGLKVFLSNNNALAHRALKHEDKDEKQPSTFPNILIPSSCLGSIAKPETIPTNQTVPEVQDLVSISEDSIPESEGSVPAFQKKLMEEDYESETEFAMGNVKVKEEPVDPEVPENSEGPEDSQDSQRLVIKEEFEEVENEIFIPEYQTKDFEHQINVKQEVKEEPEEYEEDIIKLDFDIEDLLIKQESAEEEEDYILVTSDESQEQDNDENLQSPEQKKKEESVSEADIESKKHKRSYRCSVCGYTANHRLYRTHMEYDCGKNSKKNYTCTKCDKSFVSLKKYLVHFAEHGFKHLSCPRCVKQFGTYSILAQHFHTHVKQNFIRVKLITSSGTSKPDHQCRICGETVEIKDFFKHWELHLTDRPVDPVEVERPAEDKMHEMKIKESIARLSKQPKECNHCHHRFKRINECKRHIIEHLLVDAYKHRLIFKVLRCQICEIGFNTPERYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVLVCDLCGKKFQCKSSLEKHMEKHQTTEPITCKLCNKIFYFETCYRRHVRYFHEKANLGFRCIICNERFDNLKLKWDHMWEVHQERKQKADCPICHKSFRKYADVRAHARADHGTEISVLSLKEGTNTTININKYLKQPPLVQKVRRVETLVVYDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810611;
90% Identity: -
80% Identity: -