Hamb023051.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- Prdm15
- Assembly
- GCA_949774945.1
- Location
- OX458990.1:9028907-9031821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 1.5e+02 3.8 0.0 5 21 96 112 94 113 0.92 2 11 0.00022 0.017 16.2 0.3 1 23 121 144 121 144 0.95 3 11 0.17 12 7.1 0.8 1 23 149 172 149 172 0.92 4 11 0.00036 0.027 15.5 0.2 2 23 184 205 183 205 0.96 5 11 0.0046 0.34 12.1 1.6 1 23 211 233 211 233 0.98 6 11 0.12 8.6 7.6 2.4 2 23 239 259 239 259 0.97 7 11 0.00018 0.013 16.5 1.0 2 23 265 286 265 286 0.97 8 11 0.025 1.9 9.7 0.1 2 23 291 311 290 311 0.96 9 11 1.6e-05 0.0012 19.8 3.1 1 23 358 380 358 380 0.98 10 11 0.029 2.2 9.5 0.8 1 23 385 408 385 408 0.93 11 11 0.018 1.3 10.2 1.1 2 23 414 436 414 436 0.95
Sequence Information
- Coding Sequence
- AtggataatttcaaattgaagcTCAAAAATGTCCTTCAGAGCACTAAGTATTGTGGAATATGCTTGGAAAGTGACGATAACATGAGCACCGTTGATGAGCATGTAGAGATTATTGTGAACGATCAGGCTCGTACGAAAGCTTTGACTACTATTATTGACTTGGTGTTTAAAgagACTAACATACTAGCAAGTTCATTCATATGCAATGGCTGCACAGAAAAACTTATACAGTCATATATATTCATAGAAAATGCTAAAGAAACATCCAAGATTTTAGACAACTATTATTGTGACTCAGAATTCAGTAATATTAACAATTACGAAAGTCATGTAAAATCCTGTGAGGATGTCAAAAGGAGGTTCGCTTGTGATGACTGTCCAGCCTCTTTTGATTCTTCTGATGGTTTGATGAACCACGTGAAGCATAGACATAGCACAGATATTTTTCCATGTGGTCTTTGCAATAAGAAGTTCCTCAGAGATTCGAAAAGGAGGGAGCATATGGTCAAAGTGCATAGTGGTCTTCAAAAGAATAAATCTTTGAATATAGAATGTGTTTTGTGTCAAGAAAAGTTTGATAATAAAGGAGAATTGGTGCAGCATATGAAATTTCATGGTCCTAACGCTACATATCCTTGTCGGATATGCAATACAGAGTATCAGACTTTAAGACAGTTTCGGGCACATAATCGCAAACACAACGGTCCATTTGCTACATGCCATGTATGCGGTAAGCAAATGAGAGAAGTCCTTCTAAAAAAACACCTAACTACCCACTCAGATGCGGTAGAAACTTGTGAAACATGCGGCAGATCATTTCAAAACATCACTCTTTTAAAATACCACCAAAAAGTTCATTTAGAAAGTGTCCCGTGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGACTACGGAGGCATTGGAGAGGGCATCTGTCAACAGAGAATCCTTCTCAAAAAGGAATAAAGAAACAGCAACCAAACTTGAAATGTAAACTATGTGAGTATAAGACATGGAACAACACACTTTTGGAATGTCATATGAACCGCCACCATCTGAAAATAAAGCCTTACGTCTGCCATATATGCAGTAAAGACTTTATAGGAAAACATTTGCTGAAAAAGCATATTGAAACGCACGGCGAAAAACCTTTCACTTGTGAGATATGTGGAGATAGATTTCGTTCCTCAAGCATTATGAAcgtacacaaattaaaaaagcatTCGGACAAGAGTAATGTTTGTCCGTTATGTTCAAATAAGTTTCATACTGTAAGGGATTTGAGACGGCATGTGATTAAAGTGCATTGGAAGCAGAAGAATAAGAGGTTTGATCCTCGAGAGCTAAAAGGTTTAGATAAGGAGCATTATCATTTGTTTCATGATGGTCGGAGAGTTAAAGTTGCTGAAGAGGATGTCGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MDNFKLKLKNVLQSTKYCGICLESDDNMSTVDEHVEIIVNDQARTKALTTIIDLVFKETNILASSFICNGCTEKLIQSYIFIENAKETSKILDNYYCDSEFSNINNYESHVKSCEDVKRRFACDDCPASFDSSDGLMNHVKHRHSTDIFPCGLCNKKFLRDSKRREHMVKVHSGLQKNKSLNIECVLCQEKFDNKGELVQHMKFHGPNATYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREVLLKKHLTTHSDAVETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLSTENPSQKGIKKQQPNLKCKLCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNVCPLCSNKFHTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVAEEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810456;
- 90% Identity
- -
- 80% Identity
- -