Hamb024485.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hoplodrina ambigua
Gene Symbol
-
Assembly
GCA_949774945.1
Location
OX458994.1:3048198-3062979[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.073 5.4 8.3 0.9 1 23 85 107 85 107 0.98
2 16 0.99 73 4.7 1.0 2 23 115 136 115 136 0.88
3 16 3.4 2.6e+02 3.0 0.2 1 12 168 179 168 183 0.81
4 16 0.013 0.98 10.6 1.1 2 23 193 213 192 213 0.96
5 16 0.079 5.8 8.2 2.6 3 21 223 241 222 246 0.93
6 16 0.0035 0.26 12.4 1.0 2 20 255 273 254 275 0.93
7 16 2.9e-05 0.0021 19.0 0.4 1 23 281 304 281 304 0.97
8 16 0.16 12 7.2 0.2 3 11 316 324 315 325 0.92
9 16 1.6 1.2e+02 4.0 3.6 2 23 484 506 483 506 0.95
10 16 0.00027 0.02 15.9 1.5 1 23 513 535 513 535 0.94
11 16 0.075 5.6 8.2 0.3 2 23 540 561 539 561 0.97
12 16 0.049 3.6 8.8 1.0 2 23 565 587 564 587 0.96
13 16 0.00031 0.023 15.7 7.7 1 23 590 612 590 612 0.98
14 16 0.0005 0.037 15.1 2.3 1 23 616 639 616 639 0.94
15 16 0.25 19 6.6 0.6 3 22 649 668 648 672 0.90
16 16 0.0015 0.11 13.5 2.5 1 23 684 707 684 707 0.96

Sequence Information

Coding Sequence
ATGTTAGCAGAACCGTTAAAGCTTGATGAACAAACTGTTACGGTCAAGTTAGAGGAAGAAGATGAAGAAATGTCTCGTGCTGGTGATTATGATGAACTGATCCAACCCTCGATGATACAGGATCATTCCAGTGATGTGAGCGAGCAGAGAAATAGCTCCGAAGATGAAGCAAAATGTATAATTCTGGACTTAAAAGCATTAAACGCTTATATAGATAGAAAAAGGTCTAACCCTTTGTATGTAGGAAGTCGGTTCAAGTGTGGAAAATGCGTTGAATGGTTTCAAAATCAAGATAATTTGGACGAGCATAAAAAGAAACATGATGAGtCACAGGGACCAGCAGTTTGCAAGATCTGTGAACAGAGATTTCCAGACGATTCTCTTTGTAATGAGCATTACGAACAACATTTCAtAATATACGGATGTATTCAGTGCCCATTTCAGCACTCGAACCGGCTCAAAGTGTCTGATCACTTTCGCCAGACTCATGAAGAATCCTGTTTCGATTGCATGAAATGCCAAAGAGAGTTCAATAGAGTACATCTAATTCCACCAGATCAATACGGAATAGTGGTAGAATGTACTATATGTAAGAAGAAGGTGAAAAAGAATTCTTTGAAGAGTCATATGACGATTCATGACGATGGGCGTGATAATGCAGCATATTGTGCGGATTGCGGAACTTACTACAAATCAAAGCACAGTTACGAACTCCACCTCAAACACAGTCTCAAGCACAATAGTATTGAACAACTAGGTCTCAAATGTgaacattgtaataaatatttcacaagcAAACAAATGATAAAGAATCATGTTGAGGAAATTATCGGAGTTAAGTACACCTGCGATATTTGTAAGAAGgATCTTAGAAATAAAAGACTTCTTATAAGGCATATTCAGGTAGTTCACGAGGGTAAGAAGCAAAAAGTCCGGTCTAACATGTGTGAGATCTGTGGAAAGTCATTTACAatattacCTCAATCATTATTATTGTGTTGGGAATGTATGGCCATACTCAAAaagataaaactatttaaagCTAAAGTTGAGGAAGCACAGAGGATACTGACGTGTCATTATCTGAATAAacagAAATTGATCCTACAGACCCTATCGAAATTAACAAAAACATGCACAGATTATACAATAACCGTAACACATAATGAAGACAAAGAAgattttaagcaaaaattagaaataaaagaagaaacacAACATTCTGACGATGACTTAAACAATTTTGACGAAAACAATGACTTTTGcgataaagatattaaaaaagaaaatggaataGACACAAAATCGACAACAAAGAAACATTATAGAATTGTCTATGATAAGAATACGAAAGAGGATTTGAGAAAAAAGTTTGCGATTCAACCTggatattcaaaaatattgttggaCAGAGAAAGGAATAGCGGTTTCTTTAAGAAATTGAAGATTAAATGCAAGTTCTGTGTAAATGGATTTTTAAATAAGGAGAAATTGAGAagacatttattaaaatgtcatgATGAATCTGCAGGCTCACACGCATGTCCAACTTGCAACATACGCTTTAGCAGCGAATCATCTCTATGTGCGCACGCGCAAGAGCATGAGTTCGCTTGGAAATGTGCGATCTGTGGCTTTCAATGTTACTCTGTGGGAAGACTGGACGCTCACATAAACACGCATAGAGCTATTCAGTGTGCAGATTGCGAGGCGAAATTTCAggATGTGACGTCATTTGAAAAACACCACAAATCACTGCACAGCGTGTTTATTTGCGATCATTGTGGTAAGAGATGTAAAACGAAACATCTGATTGAAAAACACATTCGGCGTCACTTCGACACCCACGTATGCACGATATGCTCTCGACGTTACAAGACTCGCGGCGGGCTGCGCACGCACATCTCGCAGAAGCACAGCGCATGCGCCGCTGAGCAAGCGTACTGCGTGCTGTGCGACAAACAGTTCGACAACGAGTTCGTGTATCGGAGACATGTTCACACCAGCGCTGCGCATCGACGCGAGAGAGATATACAGGTTAAATTGAAGTTCCCATGTCCAGAATGCAACAATACATATTCCAGACGGCAGTATATGATGAATCATTACAGACACGTGCATACGAACCAGTCCAAGCATTACTGTTCGCAATGTAGTAAaATTGTTATCTACGCTGCACTGAACGCGTTATCTCGCCGTCTGCAATCAGCTGTGCGAGCGTAA
Protein Sequence
MLAEPLKLDEQTVTVKLEEEDEEMSRAGDYDELIQPSMIQDHSSDVSEQRNSSEDEAKCIILDLKALNAYIDRKRSNPLYVGSRFKCGKCVEWFQNQDNLDEHKKKHDESQGPAVCKICEQRFPDDSLCNEHYEQHFIIYGCIQCPFQHSNRLKVSDHFRQTHEESCFDCMKCQREFNRVHLIPPDQYGIVVECTICKKKVKKNSLKSHMTIHDDGRDNAAYCADCGTYYKSKHSYELHLKHSLKHNSIEQLGLKCEHCNKYFTSKQMIKNHVEEIIGVKYTCDICKKDLRNKRLLIRHIQVVHEGKKQKVRSNMCEICGKSFTILPQSLLLCWECMAILKKIKLFKAKVEEAQRILTCHYLNKQKLILQTLSKLTKTCTDYTITVTHNEDKEDFKQKLEIKEETQHSDDDLNNFDENNDFCDKDIKKENGIDTKSTTKKHYRIVYDKNTKEDLRKKFAIQPGYSKILLDRERNSGFFKKLKIKCKFCVNGFLNKEKLRRHLLKCHDESAGSHACPTCNIRFSSESSLCAHAQEHEFAWKCAICGFQCYSVGRLDAHINTHRAIQCADCEAKFQDVTSFEKHHKSLHSVFICDHCGKRCKTKHLIEKHIRRHFDTHVCTICSRRYKTRGGLRTHISQKHSACAAEQAYCVLCDKQFDNEFVYRRHVHTSAAHRRERDIQVKLKFPCPECNNTYSRRQYMMNHYRHVHTNQSKHYCSQCSKIVIYAALNALSRRLQSAVRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-