Hamb017110.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458980.1:11687708-11701865[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1e-05 0.0008 20.3 0.9 1 23 468 490 468 490 0.98 2 11 0.0035 0.26 12.4 0.4 2 23 498 520 498 520 0.95 3 11 0.0047 0.35 12.0 1.0 1 23 524 546 524 546 0.97 4 11 0.00079 0.059 14.5 1.8 1 23 553 576 553 577 0.96 5 11 0.35 26 6.1 0.2 1 22 589 610 589 614 0.94 6 11 0.0039 0.29 12.3 0.2 2 23 635 657 634 657 0.94 7 11 2.9 2.1e+02 3.3 1.1 3 23 677 698 676 698 0.93 8 11 0.011 0.82 10.8 1.7 3 23 713 733 711 733 0.96 9 11 0.0004 0.03 15.4 0.2 2 23 739 760 738 760 0.97 10 11 1.1e-05 0.00078 20.4 3.1 1 23 766 788 766 788 0.98 11 11 0.00012 0.0092 17.0 0.6 1 23 794 817 794 817 0.98
Sequence Information
- Coding Sequence
- atggTGTTATATTGTTGTGTTATTGGTTGCGGTaataatagcaaaaaaacaaagaaagatcCAAACTCGGAGATATCGTTTCACTCGTTTCCTGCCAATCAGGAGCTTAAAACTAAATGGCTGAGAGCTATAGGGCGTCCAAACTGGACCCCCGCGAACTATACTCGAATTTGTAGTGCTCATTTCAACTATGAGCAGATCAACCATGATGGCTTCCGAAAAAGAATTCAAGAAGATGCAATACCTGTCAATTTGTTACctCCAAATTCCAACTTTGAAGCAGCTAATGTGGAAGCTTGCAGGATATGTTTGGCCACCGATGTTAAGATATACAGTCTGCAAGGCTCACATCTGGGAACCTGTATGGACTCTTTAGCTGGTGTTTTTAGTGAAAATGGAATGAACTTTGAAGATATGCCGCACTATGTCTGCTACAAATGTGTTCCAGATCTAATAAAATCCAACAAACTCATTGAAAAGTGCATGATCTCTCAAGCAACATTACTGGATATATTTGTAATGAATGGACAGataacaaaaaaactgaTAAAAGAACAAAACACAAAGACTCCTAAAGCGACAAgttctttcaaaaatttcatGCACAATGATGAAGACAGCAACATATCCCAATACACTGCATCAGACTCCAATGATAACGACAATGATGATACTTATGTTAAAGATGAAGTTGATGACGATTCATATGAAGACTCGCATCTCCAGAAGAACAAATGTAAAGTTGAAACATTGGAAGTCGACTTTGATGATATTTATGATGATCATGATGTAgaagaaattataatatatacttCTCCTGATGATGTTCATGAAAATGATGACCTCGATATGGGTTCTGATACTCAGAATGTAAAGATAGAGAAAAAAGTGAAGAAAGAACAAAATGAATCCCAACTGACCTTGAAGACTTCATCAAAGAGCAGTTACATGGACAAATACGAAGAATACATCGACGCTTCTCCGTTCAATTCCACAGACTCCAATGACAatgatgatatttattttgaaaatgacgatgatgatgatattccCAATACGTATGAAGACGATGATGTCGATAATGACGAATGTAAAACTGAAGATCTTGAAGTAGATTTTGATGAAGAAAAGGATGATGATGTTAAAGAAATTGTTATCTGCACTTCTCCTGATGATGTTAATGGAAATGGCGATCTTGATGCGGGTTTGAGTTCGAACGCTCTGAAAGAACAGgaaaatGATAGTCATGAAAAAAAGGTATACGTAAAGAGGAACCATAGACTACCTCCAGATGAAACCAACTTGTTGAAATACTTCAATGTTATCGATTTGTCGCCAGAGGAGCAGATAGAGGAATGGGGAAAAAGAACAGCTGCCCATTCTATAACAAGTGAAACTACATACCAATGTGCGATTTGTAACAAAACGTTCGCGAATCTGAGGTCTTATCGCGTTCATATGTCTAACCATGAACCTACTTTCGGCAGAGCGCAATGTCCGATTTGCAAGCTACGTTTTAAAACTCCTGCGCAGGCGACTTTGCACAGCAAGCGCGTACACAGCAGGAAGTACTTCTGCAAAACATGCCCCAAGACTTATAATAACGTaGATGTGGCCCGAAAACACCAACGCTGGCATCTAGATCGCAATCTTGCGCATTCGTGTTCGCTGTGCGGCCTTGCGTACAGCACGCGGGGGGACTTAGACACGCACAGGCAAACTGTGCATCATAAAGGTGTAAAGGAAAAAGTGACTACCAAGAAGTATAGATGTGAAACGTGCGCCATCGATTTTGCGTCGGAAACCGCAAGACAAGTTCACATGCTAACATCCACTAAGCATAAGAGGAAACCGACATTATGGACACGAGATCCGGTCCTACAAGATGGTAATTACTCCAAGAGCTGCATGATATGCGACGTTAAATACTCGTCGTACAAAGAGCTGGCCATTCACATGAAGGCGGAGCATTCTCGACTGCAAGCTAAGAGCCTTTCGTGGCGACCGGACGCGACTTATCCTAGGGACTGCGAACTTTGTGGTGTAACGCTGACGACCCGCAAGAAACACTGGCTACATATTCGATGGAAGCATCCGGAGAACGTGAATTCCTACAAAGCCGTCATTAAGACTATTTGCGATATTTGCGGAAAAGGATGTCAGAGCATGACAAAACTCCGTCTGCACCAACTCCGTCACCGCAACCCCACAGTACGTTGTGACCGCTGCCCTCGCGTCTTCTACGACAAGTTCGGGCTCGCCAGACATGCGTCTACGCACGACAACGACAAACCCCATCAGTGCAGCACTTGTGGGAGGGCGTTTAAGTTACTTAATAACTTGAAGAGGCATTATAGAGTTCATACAGACAATGCTCCATACGAATGCACGATTTGCGGCAACAAGTTCAAATACTCGACAAGCGTTAACCTGCACGTGCGCACCGTGCATTACAAGTTACCTCAACCGATGAGAAAGAAAAGAAACAGATCCTTGAAGAATACGACTGATtcgtaa
- Protein Sequence
- MVLYCCVIGCGNNSKKTKKDPNSEISFHSFPANQELKTKWLRAIGRPNWTPANYTRICSAHFNYEQINHDGFRKRIQEDAIPVNLLPPNSNFEAANVEACRICLATDVKIYSLQGSHLGTCMDSLAGVFSENGMNFEDMPHYVCYKCVPDLIKSNKLIEKCMISQATLLDIFVMNGQITKKLIKEQNTKTPKATSSFKNFMHNDEDSNISQYTASDSNDNDNDDTYVKDEVDDDSYEDSHLQKNKCKVETLEVDFDDIYDDHDVEEIIIYTSPDDVHENDDLDMGSDTQNVKIEKKVKKEQNESQLTLKTSSKSSYMDKYEEYIDASPFNSTDSNDNDDIYFENDDDDDIPNTYEDDDVDNDECKTEDLEVDFDEEKDDDVKEIVICTSPDDVNGNGDLDAGLSSNALKEQENDSHEKKVYVKRNHRLPPDETNLLKYFNVIDLSPEEQIEEWGKRTAAHSITSETTYQCAICNKTFANLRSYRVHMSNHEPTFGRAQCPICKLRFKTPAQATLHSKRVHSRKYFCKTCPKTYNNVDVARKHQRWHLDRNLAHSCSLCGLAYSTRGDLDTHRQTVHHKGVKEKVTTKKYRCETCAIDFASETARQVHMLTSTKHKRKPTLWTRDPVLQDGNYSKSCMICDVKYSSYKELAIHMKAEHSRLQAKSLSWRPDATYPRDCELCGVTLTTRKKHWLHIRWKHPENVNSYKAVIKTICDICGKGCQSMTKLRLHQLRHRNPTVRCDRCPRVFYDKFGLARHASTHDNDKPHQCSTCGRAFKLLNNLKRHYRVHTDNAPYECTICGNKFKYSTSVNLHVRTVHYKLPQPMRKKRNRSLKNTTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810457;
- 90% Identity
- iTF_00809207;
- 80% Identity
- iTF_00809207;