Hamb023841.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458993.1:364864-366362[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 0.15 13.2 0.1 2 23 152 173 151 173 0.97 2 11 0.00061 0.045 14.8 0.2 1 23 180 202 180 202 0.96 3 11 1.2 87 4.5 2.5 1 22 207 228 207 229 0.85 4 11 0.01 0.75 11.0 0.6 1 23 235 256 235 256 0.92 5 11 0.0076 0.56 11.4 0.3 2 23 262 283 261 283 0.96 6 11 7.3e-05 0.0054 17.7 0.5 2 23 288 309 285 309 0.96 7 11 0.0016 0.12 13.5 1.5 1 23 315 337 315 337 0.98 8 11 0.00014 0.011 16.8 2.3 1 23 343 365 343 365 0.99 9 11 0.0012 0.086 13.9 0.2 2 23 372 393 371 393 0.96 10 11 0.0071 0.53 11.4 0.1 1 23 399 422 399 422 0.93 11 11 0.35 26 6.1 3.9 6 19 433 446 429 452 0.87
Sequence Information
- Coding Sequence
- ATGGCCACCGAATTACACTATAGTCAGGACAAATCAAATGGACTCGAATTAGTCACAGAAGTaaccataaaaaaagaaaacaccacAGAAGAGGTTATCTGTACTGCAGAACCTAATAACGACAAAGATATTCACCATTCTGCTGACACCTCGGACATTACCAACGCCAGTGACCCAAATAATgaagttttaaataacattattattcttGGTAGTCGAGTTCCACAAGAGAATAATAGTAAGGGtaacagaaaaaaacaaacagagcTAGAGCTGCTTGGTGTAGACGTAAACGATAAAAACGGTGTGTCCAACAGCGAATATGACGTGTTCGAGGATGAAAGTAAAgtgtttaaaaagtataaacTGAGGAAAACTGAGAAAGTCTCATATAAGGAACCCGCGGACATCAAACCCAAGCGCCGCAACAGCTCAGTTGATGAGAGAGAAATGACCTGTCCCGTTTGCCAGAAAGAGTTGGAAAATGAAATGGCATTACTGAACCACCTGCGGATACATAATAAAACTGTACAAGAATACTCCTGTTCGTTGTGTGCAAAGAAATTTGACAAAAATGCTGACTTGATTGCTCACAGAGAGGAGCATAGCTCAGAATCTTTTCTGTGTACTCAATGTAAACTGGCATTCTCAGATTACTGCGACTATTTACTGCACAACTATGAGCATTTGACTCAACCATATTTCAAGTGCCCTGAATGCGGTCTGGGctataaaaaatctgtttacAAAAGTCATGTTCTAAGACATTTTGATAGAAAGTTGTCCTGCGATTTATGTTCGTTTGTAACCAACGGGGAATTTAACCTACAAGTCCATATGAATAAGCATAAATGTGAGTTACCTTGTGTCGAGTGCGGTAaggtttataataatagaagGGATTTTGAATATCATATGAGCATACATACTGGGGTCAAGACATTCCAGTGTCTTTATTGTGGCGCTTGTTTCCGCTATATTGGAGCAAGAAAGGTACACACACGGATACACACCGGTGAGAGGCCTTATACCTGCGACATTTGCGGTCACAAATCGCGACAAATAACGGATTTGCAGCGACACAAAATGACACACAACAATGAGAAAAAACTTATCTGTGATTTgtgtggaaaaaaatatttgctgaaACCTGATCTAGCTAGACATATGCGATCTCATACGAAGTTGGGCTTGTATGAGTGTCCGGAATGTGACGCTAAGTTTCTGAACGCGGCCGGGTTGAGGATTCACACGATGTTCAAGCATACAAGTGAACGACCCGTCGAGTGTGTGCCGTGCAAAAAAAGTTTTGTGAATAATAATCATTATCGGAAACATTGTAGAGCGAAGTACCATTTGAGAAACGTGTATGGGCACAAGAACAAAGAAACTGACGAGTGA
- Protein Sequence
- MATELHYSQDKSNGLELVTEVTIKKENTTEEVICTAEPNNDKDIHHSADTSDITNASDPNNEVLNNIIILGSRVPQENNSKGNRKKQTELELLGVDVNDKNGVSNSEYDVFEDESKVFKKYKLRKTEKVSYKEPADIKPKRRNSSVDEREMTCPVCQKELENEMALLNHLRIHNKTVQEYSCSLCAKKFDKNADLIAHREEHSSESFLCTQCKLAFSDYCDYLLHNYEHLTQPYFKCPECGLGYKKSVYKSHVLRHFDRKLSCDLCSFVTNGEFNLQVHMNKHKCELPCVECGKVYNNRRDFEYHMSIHTGVKTFQCLYCGACFRYIGARKVHTRIHTGERPYTCDICGHKSRQITDLQRHKMTHNNEKKLICDLCGKKYLLKPDLARHMRSHTKLGLYECPECDAKFLNAAGLRIHTMFKHTSERPVECVPCKKSFVNNNHYRKHCRAKYHLRNVYGHKNKETDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810405;
- 90% Identity
- -
- 80% Identity
- -