Hamb024511.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458994.1:3370759-3385212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00039 0.029 15.4 1.0 1 23 422 444 422 444 0.98 2 10 0.00079 0.058 14.5 0.6 2 23 452 474 451 474 0.96 3 10 2.3 1.7e+02 3.6 0.3 1 23 478 500 478 500 0.91 4 10 0.0031 0.23 12.6 0.4 1 23 505 528 505 528 0.97 5 10 0.00041 0.031 15.3 0.9 1 23 532 555 532 555 0.97 6 10 0.88 65 4.9 0.7 3 21 569 587 568 592 0.93 7 10 0.019 1.4 10.1 0.2 1 20 678 697 678 700 0.92 8 10 9.8e-07 7.2e-05 23.6 2.2 1 23 706 728 706 728 0.98 9 10 1.1e-05 0.00081 20.3 4.1 1 23 735 757 735 757 0.96 10 10 0.00025 0.019 16.0 0.7 1 23 763 786 763 786 0.92
Sequence Information
- Coding Sequence
- ATGAAGTGTTGCATACAGAACTGTGGTAATAGCGGGAAACTGAAGAAATTATGCCAGTCTAGCAGTTCTAGCTCTGAGAGAATCACATTTCATTTgtTCCCTAAAGACCCAAAACAGCGTGTATCCTGGCTGGAGTCCCTGGCCATACCGAACTGGATGCCGACCAACAGAACGGTGATTTGTTCTGATCATTTTAAAGATGACGATTTTTACTTTACGAAGCAAGGAATCAGAAGGATTAAGCATGGAGTTATACCTGTTATTGGCGATAACTGCTATGGACCTGCTGCTTCAAGGatTTGCAAACTATGTCTAGCATTGGATGAGAAGATGTTTCAATTAAAAGAGTTCAGTTTGGACAAATTGTATCAAGACGTCATGGGATTTGTGCCAAGGATAGATGAAAAAGACAGACTACCAATGGGCATATGTTGGGAATGCACTGCACGGCTGCAGTCAGCCGCTTCATTCAGATCTAAAGCGCTTTTCAGCGATGCATTGCTGTATGATCATCTAAGCAACAATAATGAGctAAAAATAACTGATGTACAGAACCTACATCGTAAACACAACAATTTGAAAACAACACTAGCTATTCGGgaagtatttaaatttaatagtcACAATATTGAAGAACACGCACCTaacactttaattaaaactgaaGTGATAGGCATTCCACATAACGAGGAGGTCGAAATTGAAGTACAAAACTTAATAACAgagaaaataacaataaaagatgaaaaaaaaaatgaacttatAGAAGAGATTTTCTCTAACAATGATATGAAAACTGAAATTGATTTAATACCTCTCACTGAGGTGCAAGTAGTGGAAACAGCAGATGTTGAAGGTGACCCCGAGTTTACAAAAGAAGTAAACGTTAATGATTTCAAAATgaattttgatgacattttacttaaaaataatgatgaaaatGAATGTGATGATAGCGCTATGAATCTGTCATTAGACAGTGATGATGAAGATGGAAAATCGAATGTTTTAAATGATGAAGTTGATTGTATAGAAGAAAAATCAACTGAagatacaaagaaaaaaagtaagcttaaaaaaaatataaaggaaaGCGATGACAGTGGTTTATGCATGAAATCAAGACCAAAGAAAAAGCAGCCATATGTGAAACCAGCCATTCCAATCGATGAGGAAATATTCACCGTCGTCATGTTGAACCCCGACACGCTGAGGCAAGAGATTCTGGCTCGCAGGGAATGCGAGAGATATACCAAAGCGCCGTACAAGTGCGACGTATGCTATAAGGGGTTCCCGACGAAGGATAAGCAGGAAAGACACGTGTTAAAACATAGCGagAAAAGCGGTTCCGTTCAGTGCGACATTTGTAATGTCCGCTTGAAAAAAAGCAGAGACCTGCGCGCGCATATGAAACAACAACACACCTCGGAATTTTTATGCAAACTATGCCCTATGGTTACAAGAAATAgAAACGTCGCACTAGGACATATGAAGTACCACGCTGGCAGCAAGTATGAATGTCCACAGTGTTTGGTTGAATTTGAaAAACAAACAACGTTATTAAACCATTTACGTTTGAAGCACATGTCGGATCACGTTTGTGATTTGTGTGGATACACGTTTGTCAGCAAAACTGGCGTCGAAGTACACAAAAGGATGAAACACAAACTATTTGATAAAACTACAGAATTTAAAGGGCCATTCTGCGAAATTTGTGACGTTAAGTTTTTAAACAAGAAGGCATATGGCAGACATCTTAGATTATCCTCTAAGCATATCAAAGAAGATGACCCTAATCGCATGAGTAATGATCCGTCCATCAAACAGCGGCGTCTTGGCTCAACGTGGGTGAATGCTGTCAGACGCCCTATTATATTCCGCAGAGACACCAACAGACTACCCGTGAATAACAGACCTGTGACTTGTGAGCAGTGTGGGGTACAACTGGAGAGTCTCCGGGTATACGCGTCCCATTTCAGGTACGCTCACCCGGGCATCAACCGGACGCAGTTCACATCCGTGACGACCCCTTACATGTGTGAACAATGCGGGAAATTCTTCTTGAACTCAACAACGCTAGCTGGTCACATGTGGATACACACGGGTCAGAAGCGCTTCCAATGCGACCACTGCAACAAGACGTTCAGCATGAAGGCGAACCTCGCTGGTCACATGCGACAGCACGAACCCGTGCGCCAGACGTACGACTGTCGTGTGTGCGGCAAGCATTTCACGTTCAGCTACAACTTGACGAGGCATATGTTtctCCACACTGGTCTAAGACCCTTCAAGTGCGACGCGTGCGAGAAGGCATTCCGGACATCCGGCGAACTGCGCTCGCATGTAGACCATGTCCATCTGAAGAAGCCTAGGCCTAAGCGAGCGAGACGGAGGGCTAAGAAATGCGATGATTCACCTAGCTTAGAATATTAA
- Protein Sequence
- MKCCIQNCGNSGKLKKLCQSSSSSSERITFHLFPKDPKQRVSWLESLAIPNWMPTNRTVICSDHFKDDDFYFTKQGIRRIKHGVIPVIGDNCYGPAASRICKLCLALDEKMFQLKEFSLDKLYQDVMGFVPRIDEKDRLPMGICWECTARLQSAASFRSKALFSDALLYDHLSNNNELKITDVQNLHRKHNNLKTTLAIREVFKFNSHNIEEHAPNTLIKTEVIGIPHNEEVEIEVQNLITEKITIKDEKKNELIEEIFSNNDMKTEIDLIPLTEVQVVETADVEGDPEFTKEVNVNDFKMNFDDILLKNNDENECDDSAMNLSLDSDDEDGKSNVLNDEVDCIEEKSTEDTKKKSKLKKNIKESDDSGLCMKSRPKKKQPYVKPAIPIDEEIFTVVMLNPDTLRQEILARRECERYTKAPYKCDVCYKGFPTKDKQERHVLKHSEKSGSVQCDICNVRLKKSRDLRAHMKQQHTSEFLCKLCPMVTRNRNVALGHMKYHAGSKYECPQCLVEFEKQTTLLNHLRLKHMSDHVCDLCGYTFVSKTGVEVHKRMKHKLFDKTTEFKGPFCEICDVKFLNKKAYGRHLRLSSKHIKEDDPNRMSNDPSIKQRRLGSTWVNAVRRPIIFRRDTNRLPVNNRPVTCEQCGVQLESLRVYASHFRYAHPGINRTQFTSVTTPYMCEQCGKFFLNSTTLAGHMWIHTGQKRFQCDHCNKTFSMKANLAGHMRQHEPVRQTYDCRVCGKHFTFSYNLTRHMFLHTGLRPFKCDACEKAFRTSGELRSHVDHVHLKKPRPKRARRRAKKCDDSPSLEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810142;
- 90% Identity
- iTF_00810145;
- 80% Identity
- iTF_00809214;