Hamb015060.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458977.1:11445971-11453765[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.3 95 4.4 0.1 3 23 113 133 111 133 0.95 2 17 0.027 2 9.7 0.1 2 23 137 159 136 159 0.95 3 17 0.0069 0.51 11.5 1.0 2 23 378 400 377 400 0.95 4 17 0.078 5.7 8.2 0.3 1 20 408 427 408 429 0.94 5 17 0.0086 0.64 11.2 0.6 2 23 439 460 438 460 0.94 6 17 9.2 6.8e+02 1.7 1.5 1 23 476 499 476 499 0.84 7 17 0.019 1.4 10.1 2.8 1 23 508 531 508 531 0.94 8 17 1.1 79 4.6 0.2 3 23 609 630 608 630 0.85 9 17 0.00015 0.011 16.8 1.8 1 23 664 686 664 686 0.95 10 17 0.00022 0.016 16.2 1.2 1 23 693 715 693 715 0.98 11 17 9.7e-05 0.0072 17.3 2.3 1 23 720 742 720 742 0.96 12 17 0.00027 0.02 15.9 2.3 1 23 748 770 748 770 0.98 13 17 5.4e-07 4e-05 24.4 1.9 1 23 776 798 776 798 0.98 14 17 0.0012 0.087 13.9 1.7 2 23 805 826 805 826 0.97 15 17 0.00088 0.065 14.3 0.8 2 23 834 856 833 856 0.97 16 17 3.1e-05 0.0023 18.9 0.5 1 23 861 883 861 883 0.97 17 17 0.0024 0.18 12.9 1.6 2 23 890 912 889 912 0.96
Sequence Information
- Coding Sequence
- ATGTCCTCGGATGAGTCAGATGATGAACCGCTATCCGTTATAgcggcaaataaaaaaatagaatcggAACAATGTGTGGAGGTAACATCAGATTCTTCGGAGTCTCCAACTAAGAAGAAAAAGAGATTACCACCACCCAAACGGTTCTCGATCACGATAAAGCTTCAAAAAAAGAAGCACGGTCAGCAACCGGTGATTGAGCGACCGGCAGACGTGTGGCTCTATCTAAAAGATCTGAATCCTTCAGGACCCTACAGCTGCTTACTTTGCTCTGATTGGTTCATAAACAGATCCAAAATCATCGTTCACTACGTTCTCAACCATAAGAAAGACTTCTGTGGTATTTGTAGATACTTTGTACCTGATAGAGAAGCTTGGTGGAAACATGTGAAGTTTCACACTCCTTGGCCTTGCTCACAATGTGTTGAGAACTTTGAAACTGAAATAGAGCTCCGGGATCATCTTAAGTCTCAGCACAATCTTGTACATTGTAGACTCTGTCATTTCCGTGTATTAGATGGTGATCTGTACCACTCGCATTTGTTCCAAAAACACAATGTCTCCAATATCATAAATAAAGATGAAGAAAATCTTTGGGAATTAGAATATGGTACTTCAAactttttatgtttactttGTAATAAGTCTAATAATTCGACTAGAACATTCTTCAACCACTACATGGGCTATCACCATTTCACTCTAAAATGTTTCACTGCTCTCATGTCTGGAAGAGACACTACATTCTTAGTGTATGGCGCTGATCTTAGAGCTGAATTTGTTGAAGAGCAACTAAAACACCATGGCAGATTTGGCGGGttggAAGCAGACCCAAATGAAACTAGAGATCTACTCAAAGTTCTCATACCAgaaattaaacaagaaataataacaGTAGATGAACCTAAGAATGATGATGGAACTCCAAAGAAGGATGATGAAAATGATGATGTTTATAAAAACTACAACGGTATTGATGACTTCGATGTTACTTCAATGGAACTGATTGTTGTACAGAAATGTTACCATGACTATATCAGTGACGTATTGTCCGATATTAATGCGTGTTCATTTTTTGAATACTCTGATGTTGATTATGATAAATTGACAACAGAATTCACGATGGATATAGTTTGCACACTGTGTAGTGTCCGATACAGTACGCTGTCAACGTTTACCTCTCATATGTTCAAAATGCACTGTGTGAAGTCCTCGCCAATATTTTCATGTAGAGTGTGCGCCACAACTTTTGAGACTCAAAATGAGCTTGATAATCATACATCAAATGAGTTGAAGGAGTTCGAAGACCTGTGGATATGTCAGTTTTGTGATAAGGAGTTTGATGATAGGGAGACTACAAGGCGACATTTAACAGAACATTGGGAACATGCTGAATATGACAATTGTTTCAGTCCACATTTAGGTTTCAAATGTCGGTATTGTCCAACTCTGTTTTGGCATGAGACAGACAGAGAGACTCATCAAGTGCGTGCACATATGTTTAATCATAAAGATGCTTATTACAAGTGTGATAGTTGCAATGAAATCTTTAGTGATAAGGTTTGGTATGTCCACCATCACCTAGAGAAGCACAGTGAACCTGATAAGCCACCTCTGTACCTTCTAAAGTGCTGTCTCTGCTGCGTGGTGTTGCCAAGTATCGAGGAGATGAGAGGACACTTCAACTGTGAACACCCTGAAGCTAGGAAGGTGTTCTGTTCCTTAGATTCTTGTCGATACAAGCCTTTGAGTCACAGGAAATCATTCAAGCTACACTTGCGGTCAATGCACTCATCTCGGTCACGTCCGGAGCGCTCCGTGGACTGTCCTGCGTGTGGGCGGGAGTTCAACAGCTCCCGGGCTTGTGGCGCGCACATGGCGCAGGCGCATGGACCCGGCAAGTTCAAGTGCAAGCTGTGCATGGAAATACTGCATACCACGGATGAAAGGAAACTCCACTATCTAATAAGTCATCCAGGACAGCATCCGTTCGACTGTTCGGAGTGCGGCAAGTCGTTCCAGTACAAGTCGTCACTGTACATGCACAAGCAGGACCATCTGCCTAACAAGCAGAACTACACGTGCACATATTGTGGGAAGGTGTTTTTGAAACGTGATTCGTTCCGCGAACACGTCCAAATCCACGAGGGTCCGCGTCACGCGTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGCTGCGTCACGAGCGGCGCCACACCGGCGAGCGCCCGTACGCCTGCCCGCACTGCCCGCGGAGCTTCGCTGATAAAGGCGCCTGTAACACGCACACCAGGACCCATTTGAAGAACACGTCGTACGCGTGTATGTACTGTGGCAAGACGTTTGTTCAGAAATCTAAGCTTACTTATCACATCAGGAAACATACCGGAGAAAACTTGGAGACGTGCGCGGTCTGTTCGAAGTTGTTCACGAGCGCGTGCTCGCTGCGCGAACACATGAAGATACATGAACCTAAGAAGGGGCAAATTAAGTGTCCACTGTGTGACCGCAAGTATCAAGATGAGCGCTACATGTTACGTCACCTCCGTACGTCACACACACACGCGCGGCACCCCTGCCCCATCTGCAACAAGACGTTGACCAGTCCCGCAGGCCTTCGTCATCATGTCATTACTCACAGCTCCTTGAAGACCATCAGGtGCAAAATGTGTCCAAAAGCGTACTCAGTGAAAAGAACAATGATCAAACACTTCCGTCGTCGACATGGCTTCAAAGGCACTGAGCCGAACTTAAAGGATTTCTACACAAGATTGGACCCTAGGGAGTGTAACTTAGGCCTCGACGAACCTATAATGATCAGCATATTCGGTCCACCTCCAAAGAAACCCATGGACGAACTCCTACTAGGAGAATACGTCACCATAGCTAACTTAGCACAGCCAAATCCAATACCAGAATCAGGCGAAGAGAATCAAACGACAGAAAATACGCATGGCGCACAAACTGAGAAGTCTCAGAACGATGAGCAATCCAAAGAGAGTGAGAAGGCTATAGAGGAAAggaaaattgttataaaaattgaGGCTAAAGATCCGAGCGATGACAATGTAGTGGACCTGGAACCCACTGATTATGTTAGTGTTAAAATTGAACCAATGGAAGATGAGAATGATGATTAG
- Protein Sequence
- MSSDESDDEPLSVIAANKKIESEQCVEVTSDSSESPTKKKKRLPPPKRFSITIKLQKKKHGQQPVIERPADVWLYLKDLNPSGPYSCLLCSDWFINRSKIIVHYVLNHKKDFCGICRYFVPDREAWWKHVKFHTPWPCSQCVENFETEIELRDHLKSQHNLVHCRLCHFRVLDGDLYHSHLFQKHNVSNIINKDEENLWELEYGTSNFLCLLCNKSNNSTRTFFNHYMGYHHFTLKCFTALMSGRDTTFLVYGADLRAEFVEEQLKHHGRFGGLEADPNETRDLLKVLIPEIKQEIITVDEPKNDDGTPKKDDENDDVYKNYNGIDDFDVTSMELIVVQKCYHDYISDVLSDINACSFFEYSDVDYDKLTTEFTMDIVCTLCSVRYSTLSTFTSHMFKMHCVKSSPIFSCRVCATTFETQNELDNHTSNELKEFEDLWICQFCDKEFDDRETTRRHLTEHWEHAEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHMFNHKDAYYKCDSCNEIFSDKVWYVHHHLEKHSEPDKPPLYLLKCCLCCVVLPSIEEMRGHFNCEHPEARKVFCSLDSCRYKPLSHRKSFKLHLRSMHSSRSRPERSVDCPACGREFNSSRACGAHMAQAHGPGKFKCKLCMEILHTTDERKLHYLISHPGQHPFDCSECGKSFQYKSSLYMHKQDHLPNKQNYTCTYCGKVFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACNTHTRTHLKNTSYACMYCGKTFVQKSKLTYHIRKHTGENLETCAVCSKLFTSACSLREHMKIHEPKKGQIKCPLCDRKYQDERYMLRHLRTSHTHARHPCPICNKTLTSPAGLRHHVITHSSLKTIRCKMCPKAYSVKRTMIKHFRRRHGFKGTEPNLKDFYTRLDPRECNLGLDEPIMISIFGPPPKKPMDELLLGEYVTIANLAQPNPIPESGEENQTTENTHGAQTEKSQNDEQSKESEKAIEERKIVIKIEAKDPSDDNVVDLEPTDYVSVKIEPMEDENDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00758517;
- 90% Identity
- iTF_00810363;
- 80% Identity
- -