Hamb024596.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458994.1:4735025-4750924[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00027 0.02 15.9 4.6 1 23 1337 1359 1337 1359 0.96 2 9 3.7e-05 0.0027 18.7 0.8 1 23 1380 1402 1380 1402 0.93 3 9 5.2e-05 0.0038 18.2 1.7 1 23 1408 1430 1408 1430 0.98 4 9 0.00012 0.0089 17.0 1.2 1 23 1436 1458 1436 1458 0.98 5 9 3.8e-05 0.0028 18.6 1.6 3 23 1466 1486 1464 1486 0.98 6 9 0.001 0.074 14.1 3.9 1 23 1492 1514 1492 1514 0.99 7 9 0.0011 0.079 14.0 0.2 1 20 1520 1539 1520 1542 0.92 8 9 0.00043 0.031 15.3 2.7 1 23 1548 1570 1548 1570 0.98 9 9 8.7e-07 6.4e-05 23.8 3.9 1 23 1579 1601 1579 1601 0.98
Sequence Information
- Coding Sequence
- atggaCAACAAGAACAGACTAGGGATGTGTAGGTTCTGTTTGGTGGAGAACGTTAGCATGTTCCTAATTGCCGACGAACGCCTACAACGCTTGTACGAGAGGCTGACTGATAGTCCAttcgTAACTAAAGATCAAAAACCGGTGATTGCTTGTTACTTCtgctgtagtaaaataaaatccatCGCGTTTTTTCGAAGGAAATGTTTGGTTTCGGAAGAGCTGTTGTCCCAGATTGTGGACAAAAATCATGTGGGGACCCCTCAATTACACCCACGCTATGTAGAGTTTTGTGGTGGATATACTCAGTCACCAGTGGAAATTGTAGATATTCCTCCTGAAGAACAAGTTGATGACGAGAAAGAAGAAATTGTTGTTATTGAAGATGatgttaaaaaagaagaaattattaatGTGGACGATGATAGTGAAAATGAagaacCGACTATAATATGCGATCTAGATGATTCTGACGTAGAAGAGATACCACTCCAGCAATCTGAATCTGCGGATATGCCACCCCAACATACTGAATCTGCGGATATGCCACCCCAACATACTGAATCGGCGGATATGCCACCCCAGCATTGTAAATCAGCAGATATGCCACCCCAACATACTGAGTCTGCGGATATGCCACCCCAACATACTGAATCTGCGGATATGCCACCCCAACATACTGAATCGGCGGATATGCCACCCCAGCATTGTAAATCAGCAGATATGCCACCCCAACATACTGAATCTGCGGATGTGCCACCCCAACATACTGAATCGGCGGATATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAATCGGCGGATATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAATCGGCGGATATGCCACCCCAGCATTCTAAATCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCACATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGGAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCTACCCCAGCATTCTAAATCAGGAGATATGCCACACCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCCACCCCAGCATTCTAAATCAGCAGATGTGCCACCCCAGCATTCTAAATCCGAAGATATGCCACCCCAACATACTGAACCGACAGATATGCTACCCCAGCATTCTAAATCAGGAGATATGCCACACCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCCACCCCAGCATTCTAAATCGGCAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCCACCCCAGCATTCTAAATCGGCAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGGAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCTACCCCAGCATTCTAAATCAGGAGATATGCCACACCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCCACCCCAGCATTCTAAATCAGCAGATGTGCCACCCCAGCATTCTAAATCCGAAGATATGCCACCCCAACATACTGAACCGACAGATATGCTACCCCAGCATTCTAAATCAGGAGATATGCCACACCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGATATGCCACCCCAGCATTCTAAATCGGCAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACAAACTGAATCGGCGGATATGCCACCCCAGCATTCTAAATCAGCAGCTATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGAATTCTAAATCAGCAGATATGCCACCCCAGCATTCTAAATCAGCTGATATGCCACCCCAACATACTAAAGCGGCAGCTATGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGAATTCTAAATCAGCAGATATGCCACCCCAGCAATCTGAATCGGTGGATCTGCCACCCCAGCATTCTAAATCAGCAGATATGCCACCCCAACATACTGAAGCGGCAGCTATGCCACCCCAGAATTCTAAATCAGCGGATATGCCACCCCAGCATTCTAAATTGGCAGATATGCCACCCGAACATACTGAAGCGGCAGCTATGCCACCCCAGAATTCTAAATCAGCGGATATGCCACCCCAGCATTCTAAATTGGCAGATATGCCACCCCAGCATTCTGATTCAGCAAATATGCTACCCCAACAATATGAATCACAATCGGAAGATACACCACCGCTCCATACCGAATTAGAAGATAGTTCACCGCTCCATACCGAATCAGAAGATATTCCACCGCTCCACGCCGAATCAGAAGATATTCCACCGCTCCACGCCGAATCAGAAGATATTCCACCGCTCCATACCGAATCAGAAGATATTCCACCGCTCCACGCCGAATCAGAAGATATTCCACCGCTCCACGCCGAATCAGAAGATATTCCACCGCTCCACGCCGAATCAGAAGATATTCCACCGCTCCACGCCGAATCAGAAGATATTCCACCGCTCCACGCCGAATCAGAAGATATTCCACCGCACCACACCGAATCAGAATATATTCCACCGCACCATACCGAATTAGAATATATTCCACCGCACCATACCGAATCAGAATATATACCATCAGATTATTCTGATGAAGACTCAGATAATTATGAACCTTTAATTACGTTACCACCGGAAGAAGAAGATGAGAATATGCCTGTGGTGGAACAGATGACCAGGGAGATGATAAGGGTGCCTGTTATGAACATGCCGAGACATGAAGTACGAGCAACGGAACCGGAAGACACAGTAACTGACAAGAAAAGGAAAAATGAGCAATCAGACGAGGAGATCAtcaagaacattaaaaaaaGGGTGCCCGTTATTAACATACCGAGACTTGAAGTACGAGAAACGCAACCGGAAGACGCAGTAACTGACGAGAAAAGGAAAACAGCGCAACCAGAAGACACAGTAACCGACACGAAAAGGAAAAATGAGCAATCAGACGAGGAGATCATCAAGAACATTAATAAAAGAGTGCTCGTTATTAAGATAACAAAACTCGACTTACGAGCAACGCAACCAGAAGATACAGCAACAGACAAGCAACAGGAGAACGAACAAGCAGACTCGGAGAACACCAGAACTCAGAACACTCAAATACGGGAGCCTGATGCGACGTTACCGAGACTCGACTCACGAGCAACGCAACCAGAAGATACAGTAACAGACAAGGAACAGGAGAATGTACTATCGGACTCACAAATTAATCAGAACAATCAAAAACCTTCTACTAAATTCCAAAAGAATAGTTTAGAAACATTAAAACGACACAATCAAAAACAAACATCGGATAAACAGTTCATTTGTGATATCTGCCAGCATAGTTACACTCGAAAGTGTAATTTGAAAAAGCATATTTTAGGACACATGGATGTGAAAGCTTATAAATCTCATATGCGCACGCACATGGACGACACCGAAAAACCTTACAAATGTGAGATTTGTCAGAAAACTTTTAGTCAGAAGCTCCAATTAGAAAATCATTCTGGGATACACAGAGGTGGCGGAGAATTTAAATGCGACACATGTCAGAGACGTTTCAGATTGGAGAAGAATTTAATTAGCCATATGCGCGCACACGCCGGCGAGAAACCGTTTAAATGCGATATTTGTGACAATAGTTATGTTCGGAAATGTAATTTAGAAGACCACTTACTTATACATGCTGGGATTAAACCGTTCGGTTGTGATGTCTGTAAGCGCCGTTTCAGACGTAAAGCGCAATTAAAAATGCATTATCGAATACACACGGGTGAAAAACCTTATGAATGTAAAACATGCTTTCAAAGATTcagaataaaacatttattaactAACCATATTCGAATACACACTGGTGAGAGACCGTATAAATGTGATATTTGCGAGCTTAGTTTTATAGATCTGCCCAGTTTGAGGAAGCATACACCTACACACAGCGGCTCGAGGCCTCATGTATGTGACATTTGTCAGAATGCTTTTAAGAAGAGTGCGCATTTGATCATTCATAAGCGGACGCACGAGAAACCTGTGGTTGATAAATCTTACGAATGCGCGCTATGTCAGAGATGTTTCTCTAACTCCAGTAACTTGAGACGtcatattaaaaaacatatttactgA
- Protein Sequence
- MDNKNRLGMCRFCLVENVSMFLIADERLQRLYERLTDSPFVTKDQKPVIACYFCCSKIKSIAFFRRKCLVSEELLSQIVDKNHVGTPQLHPRYVEFCGGYTQSPVEIVDIPPEEQVDDEKEEIVVIEDDVKKEEIINVDDDSENEEPTIICDLDDSDVEEIPLQQSESADMPPQHTESADMPPQHTESADMPPQHCKSADMPPQHTESADMPPQHTESADMPPQHTESADMPPQHCKSADMPPQHTESADVPPQHTESADMPPQHSKSADMPPQHTESADMPPQHSKSADMPPQHTEAADMPPQHSKSADMPPQHTESADMPPQHSKSAAMPPQHSKSADMPPQHTEAAHMPPQHTEAAAMPPQHSKSGDMPPQHTEAAAMPPQHSKSADMPPQHTEAADMLPQHSKSGDMPHQHTEAAAMPPQHSKSADMPPQHTEAADMPPQHSKSADVPPQHSKSEDMPPQHTEPTDMLPQHSKSGDMPHQHTEAAAMPPQHSKSADMPPQHTEAADMPPQHSKSADMPPQHTEAAAMPPQHSKSADMPPQHTEAADMPPQHSKSADMPPQHTEAAAMPPQHSKSGDMPPQHTEAAAMPPQHSKSADMPPQHTEAADMLPQHSKSGDMPHQHTEAAAMPPQHSKSADMPPQHTEAADMPPQHSKSADVPPQHSKSEDMPPQHTEPTDMLPQHSKSGDMPHQHTEAAAMPPQHSKSADMPPQHTEAADMPPQHSKSADMPPQHTEAAAMPPQHSKSADMPPQHTEAAAMPPQHSKSADMPPQQTESADMPPQHSKSAAMPPQHTEAAAMPPQNSKSADMPPQHSKSADMPPQHTKAAAMPPQHSKSADMPPQHTEAAAMPPQNSKSADMPPQQSESVDLPPQHSKSADMPPQHTEAAAMPPQNSKSADMPPQHSKLADMPPEHTEAAAMPPQNSKSADMPPQHSKLADMPPQHSDSANMLPQQYESQSEDTPPLHTELEDSSPLHTESEDIPPLHAESEDIPPLHAESEDIPPLHTESEDIPPLHAESEDIPPLHAESEDIPPLHAESEDIPPLHAESEDIPPLHAESEDIPPHHTESEYIPPHHTELEYIPPHHTESEYIPSDYSDEDSDNYEPLITLPPEEEDENMPVVEQMTREMIRVPVMNMPRHEVRATEPEDTVTDKKRKNEQSDEEIIKNIKKRVPVINIPRLEVRETQPEDAVTDEKRKTAQPEDTVTDTKRKNEQSDEEIIKNINKRVLVIKITKLDLRATQPEDTATDKQQENEQADSENTRTQNTQIREPDATLPRLDSRATQPEDTVTDKEQENVLSDSQINQNNQKPSTKFQKNSLETLKRHNQKQTSDKQFICDICQHSYTRKCNLKKHILGHMDVKAYKSHMRTHMDDTEKPYKCEICQKTFSQKLQLENHSGIHRGGGEFKCDTCQRRFRLEKNLISHMRAHAGEKPFKCDICDNSYVRKCNLEDHLLIHAGIKPFGCDVCKRRFRRKAQLKMHYRIHTGEKPYECKTCFQRFRIKHLLTNHIRIHTGERPYKCDICELSFIDLPSLRKHTPTHSGSRPHVCDICQNAFKKSAHLIIHKRTHEKPVVDKSYECALCQRCFSNSSNLRRHIKKHIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -