Hamb024370.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458994.1:1139227-1163984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00017 0.013 16.5 3.4 1 23 18 40 18 40 0.98 2 16 0.014 1 10.6 6.2 1 23 46 69 46 69 0.97 3 16 0.029 2.2 9.5 12.9 1 23 75 97 75 97 0.98 4 16 0.00059 0.044 14.9 1.6 1 23 103 125 103 125 0.98 5 16 0.02 1.5 10.1 3.5 1 23 131 153 131 153 0.97 6 16 0.0077 0.57 11.4 0.2 1 23 160 183 160 183 0.89 7 16 1.5e-07 1.1e-05 26.2 0.4 1 23 191 214 191 214 0.98 8 16 0.0002 0.015 16.3 0.2 2 23 221 241 220 241 0.97 9 16 9.4e-06 0.0007 20.5 1.3 1 23 247 271 247 271 0.92 10 16 0.004 0.29 12.2 1.3 1 21 277 297 277 298 0.94 11 16 0.0068 0.5 11.5 2.6 2 23 303 325 302 325 0.96 12 16 0.2 15 6.9 0.1 1 23 334 357 334 357 0.94 13 16 0.25 19 6.6 3.4 2 23 364 385 363 386 0.95 14 16 2.8 2.1e+02 3.3 9.6 1 23 667 689 667 689 0.91 15 16 7.7 5.7e+02 1.9 0.3 2 10 700 708 699 720 0.73 16 16 0.027 2 9.6 0.9 1 23 846 868 846 868 0.98
Sequence Information
- Coding Sequence
- ATGAAGgaaaaaacaaagaagaaaaCAAAACCCAATCAAGAAAAACCCGTATTTACGTGTCCACATTGTAGTAAGAATTTCGACAACGCATCAAACTGGCACAGTCACGTAAAGCTCCATTCCACCGAGGAGCCGTACCACTGTGACCTGTGCGACTACAAATGTAAGGTCAAGAAGTATCTGACGCGACATGTGAAGAAGGCACATACCAAGCCTACAGGCCATCAGTGTACGGTCTGCGGCAAATGCTTTCATTTCCATTGTAAACTGCGGGATCATATGAGAGTGCATACAGGAGAAAAGCCGTACAAATGTGATATCTGTGATAAAGCGTTCAGTTGTTCACCTTCTTTGACCACGCACAAATTGATACACACTGGAGAAAAACCATTTCAATGTCAGTTTTGTGACTACGCTTGCAGAGATAGGTCCACTGCGAAGAGGCATGAGGATAGACATCTAGGAATAACCAAAAACTATCTCTGTGCTATATGTAAAATGAATTTTAAAAAGAAGGAAACGTTACAAATTCACGTTGACGAAGTGCATTTTGAGCTCAATACAAGGAAGTACCCGTGTGGGCAGTGCGACAAAGTGTTCAAAACTAAGGGAACACTCAATACTCATATTAGAACAGTTCACAAGAAAGTGAATCGTATAAAATGCGAGATTTGCGGCGTCCCCACTACTAAGAATAATTTACAAGCGCACATGAGACGACATATTGACGTTCGACCTTACAAATGCAGCTATAAACCGTGTGGGAAGAGGTTCAAAGATAAGGGCGACCTCAGACGCCACCTCCGCATCCACTTCCCGGACAACCAGCACGTGTGCTCGCTGTGCAGCAGGCGGTTCGCGCGCAGGTTCCGCCTCACCAAGCACATACTGAACGGGTGCAGAGTGCAGTGCCATCATTGTGGACAGCTGTTCTCAGCTAAAAAATTTTTAGTTCAGCATATAAAGAATGCTCACGGCCCCTACCCTAAGTCGAGAGAATATCTGTGTGATATCTGTGATATGGTCACGTACAGCCGCAGAGGTATCATACAACACCTAAAATATGGTCACGGCACtgaaaaaGACACCAAATGTGAAATATGCAAGAAGGactatttcaaatatttaacattgaaAGAACACTATTTGAGTCATCACAATTTAAAATACACTTTGCTAGACCAAAAAAAAGATGGTGAAATGTCAATAAAAGAGGAACCACTCGAAGAGTCAGAAGAGGTTGGTCGCGCGCTCCCTGAGTTCATGTATGAGGTGGACATACAGAAACATGAAGTACACGATATCGGTCCACCACCATCATGCCCCCCACCATGTCTCCGCCCCCCCAGCCCGGAGCACTTCACCATAGACGCGGACACCATCACGTACTCCAAGAAGGTGTTCTCAGAAGACATATCGAGGAGTTTGATAGAGAGGGACAAGATGGAAGAGGATGCGTTCGATGATTTTTTCATCGGCCATGTTTTGAAGAAACCTGAAAAGTTGTTTGATATGCCAAAGCAAATAGTAGACGAGAAGAAGAAGGAATGCGTGGAGAAGCAACTGGAGAAACTCCTCTCGGAAGTAAGAGTACGCAACCAATACGTGGTTTTAGAGAAACTGCGGAGACAGTACAACAGACGGATTAAAATGGCGACCGGCTGTGGGAATAAAAAAGaaaaaaaaacaatcagatatttcaaaaatactgaaaataataaCGACACTACTAAACAACAGAATACAAATAATGATGAACAAATTCGTATTACTGATAATGATGAAATTATCAGCAATCAAgaaaatgatgaaaataaacaaaaacatgatTCTGAAAAAGAAAACGGTAAAAAGATTGATGATAACataaatgatgaaaaaaatGCTGAGGAAAATGATGGCGATGAGGGTAATGTTGAAAAAGATAATGATGAAGACGGTGATTTTGAGATTAGCGATGAAGAAACGAATCGGAAAGGAAAACTGAAGTTTAATACACATCAATGTTATATATGTTTTAAGcTCTTCAAAACGAAAACAGAATTGAAACTGCACTGCAAACATCATTTCGATATATGTAACGAGAAAATGCTGAAAAAATGTCCCTTCTGTGGTTATGTCACGAACTTACAAATATCGAGACACATCAAATTAGTTCACAAAGTCTCCCTCGACATCCCTTATGGAAGAATTAAAGAAAGGGACACAGAAAATGGATCAAAATACGTCTTCGAAATTGATAAAAACTGTGACTTAGAAATAATACCGAGCATCagcaatttaaacaaaatagctTCCATGAAAATTGATGAAAAGAATcgagcaacaaaaaatatttttttgggtacTACAAAGTTGGttaaaaaaggagaaaattGGATGGTCGCTAAACAAGCTGTCAAAGTCAGTAATGAGTATTTACTACCCGAGTTTACCGAAGAGGAATATCAAGTATTAAAATCTGTAGGTGACAATTATTTAGAAAGGATTCGCAGTCTCAGTATTCTTGCAAAGAAAAAGGGTTTAAAAATACTCTACCCCTGTGAGGGTTGTGATAAAATCTGCTTGACCATGAGCGCTTTAAAGCTACATAATCGAAAGCACGAAACTAACCCAAAGAAATTTAAACCTAAAGTGTGGACAAATAAGATTTTAAACGGCTTAGGTGGTAGATATCGACACGTAAacaagagtaaaaataaaaaacatattgttAACAATAATGACGGTAATGTCAAAAATCTGGGTAGCGGTAAAAGCAAAAAACTACACGGTAAATTGGAAGTAATTACTAAAAATGATACAGAGTCTGTGGCCAATCGTTTTGCTGAACCAAACCCGGTCAGAAACAAGCATAAATGTGACAAGCAACTAATAGAATTCtacaaagaaaatatcaaaGGCGGCGACATAGAATTTTggcattttttgaaaattttcaatCAAATGAGTAGAGAAAACGTCAATGATTTCAAAGATTTGGAAAATAGATACGATTTTGGTATGCATAACATCATAAATACTGCTTTAAATAACGAAAATTCTACTAAAAAAGATAAGGTAAAAAATATTCCGGTAAAACCAAAAAACTATAgggtaataaacaaaaaacaagcgTTTACTAGAGCAATTATGATTAGTAAGAAAGAGTATTTGAAAAGACTAGAGATTATAAATCAAATGAGACAACGGTTAAAGATTCAAAGttag
- Protein Sequence
- MKEKTKKKTKPNQEKPVFTCPHCSKNFDNASNWHSHVKLHSTEEPYHCDLCDYKCKVKKYLTRHVKKAHTKPTGHQCTVCGKCFHFHCKLRDHMRVHTGEKPYKCDICDKAFSCSPSLTTHKLIHTGEKPFQCQFCDYACRDRSTAKRHEDRHLGITKNYLCAICKMNFKKKETLQIHVDEVHFELNTRKYPCGQCDKVFKTKGTLNTHIRTVHKKVNRIKCEICGVPTTKNNLQAHMRRHIDVRPYKCSYKPCGKRFKDKGDLRRHLRIHFPDNQHVCSLCSRRFARRFRLTKHILNGCRVQCHHCGQLFSAKKFLVQHIKNAHGPYPKSREYLCDICDMVTYSRRGIIQHLKYGHGTEKDTKCEICKKDYFKYLTLKEHYLSHHNLKYTLLDQKKDGEMSIKEEPLEESEEVGRALPEFMYEVDIQKHEVHDIGPPPSCPPPCLRPPSPEHFTIDADTITYSKKVFSEDISRSLIERDKMEEDAFDDFFIGHVLKKPEKLFDMPKQIVDEKKKECVEKQLEKLLSEVRVRNQYVVLEKLRRQYNRRIKMATGCGNKKEKKTIRYFKNTENNNDTTKQQNTNNDEQIRITDNDEIISNQENDENKQKHDSEKENGKKIDDNINDEKNAEENDGDEGNVEKDNDEDGDFEISDEETNRKGKLKFNTHQCYICFKLFKTKTELKLHCKHHFDICNEKMLKKCPFCGYVTNLQISRHIKLVHKVSLDIPYGRIKERDTENGSKYVFEIDKNCDLEIIPSISNLNKIASMKIDEKNRATKNIFLGTTKLVKKGENWMVAKQAVKVSNEYLLPEFTEEEYQVLKSVGDNYLERIRSLSILAKKKGLKILYPCEGCDKICLTMSALKLHNRKHETNPKKFKPKVWTNKILNGLGGRYRHVNKSKNKKHIVNNNDGNVKNLGSGKSKKLHGKLEVITKNDTESVANRFAEPNPVRNKHKCDKQLIEFYKENIKGGDIEFWHFLKIFNQMSRENVNDFKDLENRYDFGMHNIINTALNNENSTKKDKVKNIPVKPKNYRVINKKQAFTRAIMISKKEYLKRLEIINQMRQRLKIQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -