Hamb024078.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458993.1:3401500-3406188[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.042 3.1 9.0 0.3 1 23 79 102 79 102 0.93 2 19 0.5 37 5.7 0.2 2 23 129 151 128 151 0.95 3 19 0.0084 0.62 11.2 1.8 2 23 174 195 173 195 0.96 4 19 0.5 37 5.6 1.8 1 23 199 221 199 221 0.87 5 19 0.1 7.6 7.8 3.4 1 23 226 249 226 249 0.96 6 19 0.14 11 7.3 1.1 2 23 257 279 256 279 0.86 7 19 4.1e-05 0.003 18.5 1.9 2 23 287 309 286 309 0.96 8 19 0.00091 0.067 14.3 0.8 1 23 315 337 315 337 0.98 9 19 1.9e-05 0.0014 19.5 2.4 1 23 343 365 343 365 0.99 10 19 0.00016 0.012 16.7 4.3 1 23 371 394 371 394 0.97 11 19 9.8 7.3e+02 1.6 0.2 2 23 441 463 440 463 0.90 12 19 0.83 61 5.0 7.1 2 23 486 507 485 507 0.97 13 19 1.1e-06 7.8e-05 23.5 0.2 1 23 511 533 511 533 0.98 14 19 0.44 32 5.8 0.4 1 13 538 550 538 561 0.82 15 19 0.8 59 5.0 0.2 2 12 569 579 568 591 0.86 16 19 0.0086 0.64 11.2 0.5 2 23 599 621 598 621 0.97 17 19 2.3e-06 0.00017 22.4 0.9 1 23 627 649 627 649 0.98 18 19 1.2e-06 9e-05 23.3 1.4 1 23 655 677 655 677 0.98 19 19 7.2e-05 0.0053 17.7 1.3 1 23 683 706 683 706 0.97
Sequence Information
- Coding Sequence
- ATGACCATCGCTCATAATGACAGCTTAGACAACATCGCTACGCGTGTTCAACGTAACGTGAACGTCAAGATCGAAACGGATAGTGACAAAAAAGTGACACGCAAAAGTACCAGAAGAAAAGTCGAACAAGCTGAGGAGCTCAAAGTTAATGAGTTGATAAAACACAGAAGTAATATATGTCTAATCTTGCAATGCTCTAACGCAACCCCCATACGACGCAGAGGCGGCATCGGATATGCATGCTGCTTTTGCGCAGAAGAGTACCCAGACCCTacagacttaaaaaaacatactctAGAAGGGCATGAcgataaaacaaaacttaaattcATGGTCGGCAGAATGATGTTCTCATTCCTCGTCAAATTAGACATTACTAATCTTACTTGCAAAATATGCGAAAGCAAAATCGATACTTTAGAACAACTTGTAGATCATTTGTTGAAGACACACGATAAGAAGATTTACACTGATATCAAGAGCCATATAATGCCATTTAAATTCGATGATGATACACTACGATGCATGTTTTGCCAGAACGTctataacaaattcaaaaacttACAACAGCACATGAACGTACATTGCAGGAATTATATATGTGAATTTTGTGATGCAGgatttataaacaaacatatgCTATCCTGCCACACCGAAGCGCATAAAACTGGCACTTTCAAATGCGATTTATGTGCAAAAGTCTTCGATACACATAGGAAGAAGAAAAGTCATGAAAAATCAGTTCATATACACGCTAACATGCTTAGTAAGTGCGGATATTGCAATGAGAAGTTTACGAATTACAAGAAGAGAGATGATCATTTGTCGCTAGTCCATGGCGTTCAGATCAAGGCCGTGAAATGCAACGCGTGCGACAAAACCTTCGATCACAAAAGCGCACTAACAATCCACACTAAACGTGACCATCTGATGGAGAGAAGATACAAATGCGCTCAATGCGATATGAAGTTCTTCGGATCCAACGAGCTGAAGCTCCACATGGTAAAACATACAGGAATAAGGGAGTTCAAATGTACGGTCTGCTTTAAATCTTATGGACGGAAGAAAACTTTGAGTGAGCATATGCGGATACATAACGATGATAGACGGTTTAAGTGTGAGCACTGCGGTCAAGCATTCGTACAGAAATGCAGCTGGAAAGGCCATATGAGAAATAGGCATGGTGAACTGTACCCCGACCCTGCAAATCTGAAGAAACATAACTTTGACAACCACAAAGGACGGCGCGACTCTTTAATTCCACGCCTTCATATTAACACTATAGAAGGGTTTATTGTGAGACTAGACATCACTGATTTACGATGTCTACTATGCAAGACTAACATAGACACAATAGAAGAATTGATAGAACATCTACACGGAGACCACAAAAGAGATGTACACACCGATATCAAAAACCAACTCTTCCCATTTAAGTTTAACGGCGAAAACTTGACATGTTGCATATGCTCCTGTGCTTTTGGAAGATTCAGGAAACTGTCAGAGCATATGCACACTCATTACAATAATTTCATTTGTGACGAATGTAACAAGGGCTTTGTAACCGAAGGAAGTCTTACACGACACCTCCGCATTCATGACAAAGGCAAGTTCAAATGTGGAATCTGCTCGAAAGTTTATGATACTGAAGCAAAGGAAAAGTATCATAAAATACTGGTCCACTTAAACAAGGGTTTAAAAAATAAGTGCGGGTACTGTAATGAAATGTTCAAAAATATCATGCGAAGAGATGACCATTTGGTGAAAGTGCATGGAGTCAAGTTGAAAGTTGTCAAATGCCACGCGTGTGACAGGACGTGGCCCAACACGAGCGCTCTAAGAATACACATAAGACGAGATCACTTGATAGAGAGACGTTTCAAATGCACACAGTGCGATAAAGCATTTTTCCAAGCTGCCAATTTGAAGTTACACATGGTAAAGCACACAGGCGCAAGAGAGTTCCAATGTACTGTGTGCCAAAAGATGTATAGTCGGAAGGAAACTTTAAGGCAGCATATGGAGATACATAGTGACGTGAGGCGGTTTAAATGCGTGCACTGCGGTCAGGCATTCGTGCAGAAAGCAAGCTGGAAAGGCCACATGAAGAATAGGCACGACGAACTGGTCTGA
- Protein Sequence
- MTIAHNDSLDNIATRVQRNVNVKIETDSDKKVTRKSTRRKVEQAEELKVNELIKHRSNICLILQCSNATPIRRRGGIGYACCFCAEEYPDPTDLKKHTLEGHDDKTKLKFMVGRMMFSFLVKLDITNLTCKICESKIDTLEQLVDHLLKTHDKKIYTDIKSHIMPFKFDDDTLRCMFCQNVYNKFKNLQQHMNVHCRNYICEFCDAGFINKHMLSCHTEAHKTGTFKCDLCAKVFDTHRKKKSHEKSVHIHANMLSKCGYCNEKFTNYKKRDDHLSLVHGVQIKAVKCNACDKTFDHKSALTIHTKRDHLMERRYKCAQCDMKFFGSNELKLHMVKHTGIREFKCTVCFKSYGRKKTLSEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRNRHGELYPDPANLKKHNFDNHKGRRDSLIPRLHINTIEGFIVRLDITDLRCLLCKTNIDTIEELIEHLHGDHKRDVHTDIKNQLFPFKFNGENLTCCICSCAFGRFRKLSEHMHTHYNNFICDECNKGFVTEGSLTRHLRIHDKGKFKCGICSKVYDTEAKEKYHKILVHLNKGLKNKCGYCNEMFKNIMRRDDHLVKVHGVKLKVVKCHACDRTWPNTSALRIHIRRDHLIERRFKCTQCDKAFFQAANLKLHMVKHTGAREFQCTVCQKMYSRKETLRQHMEIHSDVRRFKCVHCGQAFVQKASWKGHMKNRHDELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -