Hamb024068.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458993.1:3325072-3329953[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.45 33 5.8 0.9 1 23 25 47 25 47 0.94 2 25 5.2 3.9e+02 2.4 0.1 3 23 77 98 75 98 0.92 3 25 0.004 0.29 12.2 0.3 2 23 119 141 118 141 0.94 4 25 0.00059 0.044 14.9 1.6 2 23 147 169 146 169 0.95 5 25 0.004 0.3 12.2 1.5 1 23 174 197 174 197 0.96 6 25 3.1 2.3e+02 3.2 0.1 2 23 200 222 199 222 0.88 7 25 0.045 3.4 8.9 1.8 2 22 229 249 228 249 0.94 8 25 0.0019 0.14 13.2 1.0 1 23 309 332 309 332 0.89 9 25 0.038 2.8 9.2 0.2 3 23 361 382 359 382 0.92 10 25 0.0011 0.08 14.0 0.9 2 23 440 462 440 462 0.92 11 25 0.14 10 7.4 0.3 1 23 504 526 504 526 0.94 12 25 4.3 3.2e+02 2.7 0.2 2 21 554 573 553 576 0.87 13 25 0.00047 0.034 15.2 2.3 2 23 597 619 596 619 0.95 14 25 0.00086 0.064 14.3 4.8 1 23 624 646 624 647 0.95 15 25 0.0002 0.015 16.4 3.9 1 23 651 674 651 674 0.94 16 25 0.059 4.4 8.6 0.4 2 23 677 699 676 699 0.94 17 25 0.083 6.1 8.1 2.1 2 20 705 723 704 728 0.91 18 25 0.0051 0.38 11.9 4.4 1 23 772 795 772 795 0.94 19 25 0.012 0.85 10.8 0.0 1 23 868 891 868 891 0.91 20 25 9.8e-05 0.0073 17.3 0.9 1 23 896 919 896 919 0.94 21 25 0.00054 0.04 15.0 0.2 1 22 925 946 925 948 0.91 22 25 0.00034 0.025 15.6 0.6 2 23 954 976 953 976 0.97 23 25 0.0039 0.29 12.3 5.1 1 23 980 1003 980 1003 0.97 24 25 0.055 4 8.7 0.5 2 23 1010 1031 1009 1031 0.96 25 25 0.027 2 9.7 2.2 1 23 1037 1059 1037 1059 0.96
Sequence Information
- Coding Sequence
- ATGAAAAGACGAAGGAACCTCCAAATACTCTTTAACAATACATCTATCATACCTTTTAAGTGGCGCGGGAAATATCTCTGCTTCTATTGTAGCAAAGACATTGCAGAGTACACTGAGCTAAGGAAACACACGAAAGACCACGGCAACTGTTCCATAAAAGACCATTCTCTTAAAGTCTTGAAAGGCGGACAGAATATGGAAATCAAAGTCGACATTTCGATTATTAATTGCGAAGTATGTGCGGACACGTTTAAGTCTTTCGACGAAATCATCaatcatttgtttgttaaacaTGAACTGGAATATGATAGAGAAGTAGACATGGCTGTTGAAGGGTATAAGCTTTCCGATCTCAGTTGCACTGGCTGTGATGAGAAATTCACCTACTTCGGTTATTTAGTCTCACATGTAAATAATAACCACCCAAAAAACTGCCTCATTTGCGAGTATTGCGAACAGAAATTCAACAAACGACGCGATCTATTTTCTCACATGAAAAACTATCACAGAGAAGGTGGTTACCAATGCGAAGTATGCTCTCAGACATTCAGCTCTCTAAATATATTAAGAAAACACAGAAATAATAGACATTTGATCCGATGCAACATTTGCAATTTAAGACTACCGTCAGCAGctgttaaacaaaaacatatcgaCCAAGAGCATCCCGACGATGGGTCTTTGCAATGCGACACTTGCTTGAAGGAGTTCCATACGAAGCAAGGCTTAAAAATGCACACAAGGAAATGTAAAGGCGAAGAGATATTCGGAATCGCGATCAAGCAAGAAGACAGCACCGCTATGGACTTAGACCAGACTTACGAGGAACAGGTCAAAAAACCATGCGTCAAACAACTTAGGGAGAATTTAGTCATAATCATAAACATGTCAACAGCAATCCCATTTAATTTCTATAAGAATAAGTTTAACTGCTTTTACTGTTCCAAAGATTTCACCGATTCGGATTCGATGAAACAACACGTGGTTTTAGAGCACCCTGTATGCGATGTCAAACAGAAATGTATACGGAAATGTAGAGAGTCTGTCACATCCGTTAAAATCGATATTTCGTCACTCGCTTGCAAAGTCTGCTTCGAATCCTTAACCGATTTGGACCATCTAATCGATCATTTGATAGCGAAACACGATGCTAAATATGATAAATCGATAACAACGTGTCTACAACCGTATAGGTTGGTTGAAGATCACATGGTATGTCCACATTGCCCTGATGAAGTGTTCCGCTTCTTTGCTGAGTGCAATATTCCATCGCGTTTATACATGCACATGGCGCGTGCGCACGGTGTTAAAGCCGCTAAATGTCCGAAATGCCCAGAGGCTTTCACCACTCAGCATTTGAGACAGAAACATTTGATTGATGCCCACAATACTGGGCATAAATATTTGGAAACCGAGGTGTCAAAGCACAGTACTAGTTATCTAAGGAGGAGGAATCTACAAATAATACTCAACAATACATCGATCATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGTGGGGACGATTCGGAGACGCCCGAAAGTCTCCGGAAACACACGAAGGCCCACGGACCTTGCACTGACAGAGATAGAGCTATACGACTAGTCAAATCAGCTGATgtagaaattaaaattgacgTTTCGGATATTACATGCGAGTTATGTTCGGAAAATTTTCAGTTTTTAGATGAAATTATCAATCATCTTGTTTTTAAACACCAGTTGCCTTACGATAAGGATATAGACATTCTCATATCACCGTACAGGCTGTTAGACCTCCATTGTCTCTTATGCGATAAAAGTTTCAATTATCTACGTAAATTAATCTCCCATATGAACACCATGCATCCGAACAACTGTTTTATCTGCCCCGAATGTAAGCAGGAATTTAACAAAAAGAGGGATTTACATTCCCACATAAGATTCCATCATAAAAAATACCATTCTTGTACGAAATGCGATGAAACGTTTTCTACAAATTCCGCGTTACATACTCATAGGTCTAACGCTCATTCGTCAACATGCAACATTTGCTTTCAAGTATTTTCGTCTGACAGCAAGAGGTTAGCTCATCTGAAGGCTGACCATGACACTGGCCAAAATCAATGCGGATTCTGTAACAAAACGTTGACAACGAAACAGGCTTTCATACGCCATGCTGCAAATTGCTCACATAAACCGAAAGAAGAAGCCATTTTGGTTGATGACGAAGACAAAAAGATATCCATAAAAGATATAAGGAAATGCCTAGCTTGTATCTTTAATATGACAACGGCTTTACCTTTTAAGTTCTTCATGAATAGATTCCGCTGTTTCTATTGCACAAAAGACTTTACCACTTGCGAGCTTTTAAAAGAGCATACGTTTGTAGAACATCCTTACTGCGATATAACCTTTAAATCTATGAGATTAAGGAACAGATATGATGGAGTCCAAATCAAAATTGATACGTCATCATTGTCTTGCAAATTATGCCTTGTTACCTTGCAGGATTTGAACGATGTGATTGAGCATTTGACTAAAGAGCATAAGGTGAAATGCGATGTCTCTGCGGAGAGTCATCTGCAGCCGTTTAAGCTTATCAAGGATAATTACCCTTGTCCTATCTGTGGGGTAGTGTACAGATATTTCGGAGTTCTGCTCAAACACGTTAGCGCGGCCCACAGTGACAATAAGCACATTTGCATGTATTGCGGAAAAGCGTTCAGGACGGACCCGAATCTTAGAGCACATGTATCCAGGCGTCATAAAATTGCCGACAATTACAAGTGTAACACTTGCGAACTGCAATTTGGTACGAATAGCGCGTTAAGAAATCATCAAGGCGCAGTTCATGGTACCAAGCTGGTCCAATGCTTCGAATGTTCAGAGAAATTCGCGTCTCAGTACTCAATGCAGCGACACTTAATTACTTCTCACGGCACGGGCCACAAGTGCACTTACTGCAATAAATTGTTCACTAAAAACTCTTTCATGGTCAACCATGTAAGGAGGTCACActtaaaagagaaaaatgtaGAATGTTCTGTGTGTTTGGAGAAGTTTTTTGACAGTCAAAGGCTGAAAATGCACATGGTCAAGCATGTAGGAGAGAGGAATTTCCATTGCGATATTTGTGGAAAGAAGTTTTTGTGGAAAAGGAATCTTAGGGGTCATATGTCCTCTCATATTCGGAACGCGAACGCAAGAAGTGTTACCTAG
- Protein Sequence
- MKRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRKHTKDHGNCSIKDHSLKVLKGGQNMEIKVDISIINCEVCADTFKSFDEIINHLFVKHELEYDREVDMAVEGYKLSDLSCTGCDEKFTYFGYLVSHVNNNHPKNCLICEYCEQKFNKRRDLFSHMKNYHREGGYQCEVCSQTFSSLNILRKHRNNRHLIRCNICNLRLPSAAVKQKHIDQEHPDDGSLQCDTCLKEFHTKQGLKMHTRKCKGEEIFGIAIKQEDSTAMDLDQTYEEQVKKPCVKQLRENLVIIINMSTAIPFNFYKNKFNCFYCSKDFTDSDSMKQHVVLEHPVCDVKQKCIRKCRESVTSVKIDISSLACKVCFESLTDLDHLIDHLIAKHDAKYDKSITTCLQPYRLVEDHMVCPHCPDEVFRFFAECNIPSRLYMHMARAHGVKAAKCPKCPEAFTTQHLRQKHLIDAHNTGHKYLETEVSKHSTSYLRRRNLQIILNNTSIIPFKWRGKYLCFYCGDDSETPESLRKHTKAHGPCTDRDRAIRLVKSADVEIKIDVSDITCELCSENFQFLDEIINHLVFKHQLPYDKDIDILISPYRLLDLHCLLCDKSFNYLRKLISHMNTMHPNNCFICPECKQEFNKKRDLHSHIRFHHKKYHSCTKCDETFSTNSALHTHRSNAHSSTCNICFQVFSSDSKRLAHLKADHDTGQNQCGFCNKTLTTKQAFIRHAANCSHKPKEEAILVDDEDKKISIKDIRKCLACIFNMTTALPFKFFMNRFRCFYCTKDFTTCELLKEHTFVEHPYCDITFKSMRLRNRYDGVQIKIDTSSLSCKLCLVTLQDLNDVIEHLTKEHKVKCDVSAESHLQPFKLIKDNYPCPICGVVYRYFGVLLKHVSAAHSDNKHICMYCGKAFRTDPNLRAHVSRRHKIADNYKCNTCELQFGTNSALRNHQGAVHGTKLVQCFECSEKFASQYSMQRHLITSHGTGHKCTYCNKLFTKNSFMVNHVRRSHLKEKNVECSVCLEKFFDSQRLKMHMVKHVGERNFHCDICGKKFLWKRNLRGHMSSHIRNANARSVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -