Hamb024080.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458993.1:3413091-3419054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.006 0.45 11.7 1.6 1 23 81 104 81 104 0.94 2 19 4.6 3.4e+02 2.6 0.1 2 23 132 154 131 154 0.93 3 19 0.001 0.075 14.1 0.3 1 23 204 226 204 226 0.97 4 19 0.29 21 6.4 2.6 1 23 231 254 231 254 0.94 5 19 0.77 57 5.1 2.2 1 23 261 284 261 284 0.93 6 19 0.00018 0.014 16.5 3.4 1 23 291 314 291 314 0.97 7 19 1.2e-05 0.00089 20.2 0.2 2 23 321 342 321 342 0.98 8 19 6.3e-07 4.7e-05 24.2 2.2 1 23 348 370 348 370 0.99 9 19 0.062 4.6 8.5 0.4 1 13 376 388 376 390 0.91 10 19 0.00029 0.021 15.9 2.4 1 23 456 479 456 479 0.98 11 19 0.22 16 6.8 0.6 2 23 506 528 505 528 0.96 12 19 0.62 46 5.3 3.2 2 23 551 572 550 572 0.93 13 19 0.00033 0.024 15.7 0.2 1 23 576 598 576 598 0.96 14 19 0.00051 0.038 15.1 0.4 1 23 603 626 603 626 0.98 15 19 0.0015 0.11 13.6 0.7 1 23 633 656 633 656 0.95 16 19 0.004 0.3 12.2 0.8 2 23 664 686 663 686 0.95 17 19 0.00026 0.019 16.0 2.9 1 23 692 714 692 714 0.97 18 19 1e-05 0.00077 20.4 4.0 1 23 720 742 720 742 0.99 19 19 2.7e-05 0.002 19.1 1.5 1 23 748 771 748 771 0.98
Sequence Information
- Coding Sequence
- atgttcaactcccatgtaatagaagATAATCGAGAAAAAGTGGCAACAACTACAGAAATCAAAATAGAACCCACGGATGAAGCAACTGAAGTAGATAATGAAGAGCATGATATAAATATAAAGGCTAAGACAACGCATCGACCACGCATAAAGCGACTCCTGCACAAGCATTTACACAATCTAAAAATAATCCTAGAATCTACTAACGCCACCATGATACTCAGGCATGGAGATAAAGGATTCCTCTGCTGCTACTGCACGGAATCTTTTCAAGAACCCATGAATTTGAAAGTACACACATTAACAGAACATCGAAATGTTGAAAAATTCTATGGAAACATCAGAGCCAATGGGCCATCTCGGTTCTTAGTCAAACTTGATATTACGAACTTAAAATGCCTGCTCTGCAACGCCTATATAGATTCTCTCGAAGACCTGTTCGTACATCTGACAAGGACACATGATAAGAGCTTTCATACTGATATACACGATCAAATATTTCCTTTCAAGTTTGATGCAGAGCAATTGAGATGCTGTCTTTGCACAAACGACGTCGTTTTCCTCACATTCAGAGCATTACACGAGCATATGCACAAACACTACCGCTATTTTATTTGTGATGACTGTGATGCAGGATTTATCAATCACATATCACTATCTAGACATACTGTCACTCACACAAAAGGAGCATTCACTTGCCGACACTGTCCTATCGTTTTTGATAATGTATTCAAGAGACGGAACCATGAGATGAGAACCCACACTAGCACTGGCAAATCACATATATGCCATTTCTGCAATGAAGGTTTTAAGGAGTATATTGATAAGGAATTGCATCTGTCTACAATTCATGGGGTTACACCTCGAAAGTATAACTGTACTGCATGTGACAGAACTTTCTCGACCCATAGCTTTCTGAACGTCCACGTACGACGATTCCATCTCATGGAGAAAAGTCGAAAATGTCCGGAATGTGACCGAGCCTTCTTCAGAGGAGGTGACCTGAAAAAACACATGTTGATCCATACAGGAGCTAAGGACTTCAAATGTGAAGTCTGCTCGAAGTTTTTTGCTAAGAAGTCTACTCTGACTCAGCATATGAGGATTCATAATAATGATAGACGATTCAAGTGCACAGTTTGTGGTCAGGCGTTTGTACAAAAACCTAGTGATCAACATAAATCTGACGtgaaaaaagaaacgaaaaatATTGAACCTGAAGAAAATAAAGACGAAGTTTTAGAAGACACTGTGAAAGAACTAAAAACGGCATCAAGAAACGAAATTGTGAAGCATCGGGCTAATATTAAGGAGATACTTCTTAACTCTAACGCAACACCAATAAGAAGGTACGGAGGAATTGGCTACACATGCTGCTACTGTCAAAAACAATTCGAAGAGCCAGCAGACCTCAAAAATCACACACTAACAAACCACAAAAATATCTCAGAAGCAAACTTCATGTCGAAAATGAACATGTCTGAATACGTCATCAAATTAGACATAACAggattaaaatgtaaattatgcGACAGTGAAATGAATACTCTAGACAATTTCACTGACCATCTCCAAAAAATACATGACAAAAAGATCTCCGAAACCCATATGAACTATATCTTTCCATTTAAGTTCGACAACGATGAACAAAAATGCATTATTTGCTCGAATACATTCAGCAAATTTAGAACTCTTGTGAGTCACATGCATATGCATTACAGAAATTTCATTTGCACGATATGCGACGCTGGATTCGTGAATCGAAACTCATTGACTCAACACACAGAGAATCACAAAACTGGATCATACGTTTGTGATTATTGTCCTAAAACGTACCCCACTCCAGTAAAGAAAAGATTGCATGAAAGAACATCTCACACACACGTGCATCAAACATACAAATGTGGGTACTGtaaggaaacttttaaagattatGGACAAAAGGAAACACATGTAGCATCTGTACACGACGTAGTTTCCTCTATAGTTGTATGCAAGGCTTGCAACAAAGaatttaccaccacaaaaagaCTTAACATACATGTTAAGAGAGACCACTTGATGGAAAGAGCACACAAGTGCACAGAATGCGACATGACGTTCTACTCTACAACTGGACTTAAAAGCCACATGGTCAAGCATACGGGGTCGAAAGAATTTCAATGTTCGGAATGCTTGAAGTGCTACGGTAGAAAGAAGACATTGAATGCTCATATGCGGACACATGCTCAAGAGAAGAAGTTCAAATGTGAATCTTGTGGACAGGATTTTACGCAGAAGAGTACTTGGAGGGGTCATATGCGGTCTAAGCATGGAGAAATTGTTTAG
- Protein Sequence
- MFNSHVIEDNREKVATTTEIKIEPTDEATEVDNEEHDINIKAKTTHRPRIKRLLHKHLHNLKIILESTNATMILRHGDKGFLCCYCTESFQEPMNLKVHTLTEHRNVEKFYGNIRANGPSRFLVKLDITNLKCLLCNAYIDSLEDLFVHLTRTHDKSFHTDIHDQIFPFKFDAEQLRCCLCTNDVVFLTFRALHEHMHKHYRYFICDDCDAGFINHISLSRHTVTHTKGAFTCRHCPIVFDNVFKRRNHEMRTHTSTGKSHICHFCNEGFKEYIDKELHLSTIHGVTPRKYNCTACDRTFSTHSFLNVHVRRFHLMEKSRKCPECDRAFFRGGDLKKHMLIHTGAKDFKCEVCSKFFAKKSTLTQHMRIHNNDRRFKCTVCGQAFVQKPSDQHKSDVKKETKNIEPEENKDEVLEDTVKELKTASRNEIVKHRANIKEILLNSNATPIRRYGGIGYTCCYCQKQFEEPADLKNHTLTNHKNISEANFMSKMNMSEYVIKLDITGLKCKLCDSEMNTLDNFTDHLQKIHDKKISETHMNYIFPFKFDNDEQKCIICSNTFSKFRTLVSHMHMHYRNFICTICDAGFVNRNSLTQHTENHKTGSYVCDYCPKTYPTPVKKRLHERTSHTHVHQTYKCGYCKETFKDYGQKETHVASVHDVVSSIVVCKACNKEFTTTKRLNIHVKRDHLMERAHKCTECDMTFYSTTGLKSHMVKHTGSKEFQCSECLKCYGRKKTLNAHMRTHAQEKKFKCESCGQDFTQKSTWRGHMRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -