Hamb024077.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458993.1:3396184-3401199[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.031 2.3 9.4 1.8 2 23 20 41 19 41 0.95 2 16 0.00072 0.053 14.6 0.6 1 23 45 67 45 67 0.96 3 16 0.0081 0.6 11.3 1.6 1 23 72 95 72 95 0.94 4 16 0.0021 0.16 13.1 1.1 2 23 104 126 104 126 0.90 5 16 3.1e-06 0.00023 22.0 0.5 2 23 134 156 133 156 0.97 6 16 5.9e-05 0.0044 18.0 2.1 1 23 162 184 162 184 0.98 7 16 0.00087 0.064 14.3 1.1 1 23 275 298 275 298 0.97 8 16 0.85 63 4.9 0.1 2 23 325 347 324 347 0.94 9 16 0.0029 0.22 12.7 0.9 2 23 370 391 369 391 0.97 10 16 0.00049 0.036 15.1 0.1 1 23 395 417 395 417 0.95 11 16 0.016 1.2 10.3 3.0 1 23 422 445 422 445 0.97 12 16 1 76 4.7 1.3 2 11 451 460 450 473 0.74 13 16 0.00031 0.023 15.8 0.4 2 23 482 504 481 504 0.96 14 16 2.4e-05 0.0018 19.2 1.2 1 23 510 532 510 532 0.98 15 16 3.9e-06 0.00029 21.7 0.5 1 23 538 560 538 560 0.98 16 16 0.00012 0.0092 17.0 3.2 1 23 566 589 566 589 0.98
Sequence Information
- Coding Sequence
- atgcaTAAAGACATCAAAAATCATATATTGCCCTTTAAATTCGAAGGGGAGGAATTAAACTGCGTGTTATGCTCGAAAACCTACTACAGCTTCAAGCTGTTGCAAGACCACTTGCACGTGCACTATGAGAATTACACCTGTGAATTGTGCAACTCTTCATTCATCAATAAAAGAGCCCTTATCAATCACAAGGGTAGGCATAAAGAAGGAGAATTCTCTTGCACGACCTGCTCGAAAGTATTTGACACAAGAGAGAAGACAACAAGCCACGAGAAACTCGTACACACTCTTGAACAGAATAAGAGGAATAGATGTCCACATTGTGACGAAAAATTCGCTAACTACACACAGCGGACTCGGCATTTGGTGGAGGTACATGGCGTAGAGCCTCGTGTGATGAAATGCCCGGCCTGTGACAAGATATTTGATAGAAGAGACTCATTGAATCGACACATTAAACGTGATCACttgcttgaaagaaaatatgaatGTGATCACTGTGTTATGAAATTTTATAGAAAGAAAGCGCTAATAAATCACATGATAAGACATACAGGTCGAAGTGAAGCGGCAGATCTTGCCTGCAAAATACTATCCGAGATCAAAGAACGACCGAAAACTTCAAAAACACCTACACCTACCAGCTCTAAGGTAGACAAAGAAAAGAATACAAACAGAGTACCAAAATCAGAAACTGATGCAGAACGTATTAAGAAAAAGAGTCAAAAAGATTATCAAGAAGAATTGTTTAAACAACGTTACAATATTAGAGAGATTCTTCTATGTAGCAATGCGACGCCGATTCGTAAGTATGATATTGGATATGTATGCTGTTTCTGCGAGAAGCAATACCCTAACGCCGAAGAACTGAAGACACATACCATCACAGAACACGATGACAGCGACAAACTTGACTTTATGAAAGGAACGCGAATGTTGTACTTCCTAGTCAAGCTAGACATTACCGGGCTAAAATGTACCTTGTGTGAACAAGACGTAGATTCAGTTTTAAGCCTCATCAAACACCTGAAAGAAGAACATGGAAAGCCAATGTTCGAAGACATAAAGAGTTACATTATACCATTTAAGTTTGAAGACGCTACACTTAAATGCACTTTCTGCCCTCTAATATTCAACAGATTCAAAGTTCTACAAGAGCACATGTACACACACTATCAAAACTTCGTCTGTGACGTTTGCGGCACTGGTTTCGTTAACGAGAAAATGCTTAACACACACAGTGACAGTCATAAAGTAGGAGTATTCAGATGCGGACACTGTCCTGAGAAATTTGACACACCGCGGAAAAAGAAATACCATGAAAAGACTGTTCATCTGCTTTCTTTGAATAAATGTGGGTATTGTGACAAAAAGTTTATGTGGTACAGGCAAAAATGTGCTCATATTGCTGAAGTACATGGCATTGTTGTCACCCAACCTAAGGAGTGCAAAGCGTGCGATAAAGTCTTCCCATCAGATTCCAAACTGCAGCTCCACGTGCGAAGAGATCACTTGCTCGAACGAAGATTCCAATGCACTGAATGCGATATGCAGTTCTTCACTAAAGAGTCTCTAAACGACCACATGGTCAAGCATACAGGGATCAAATTATTCTCCTGCAAGGTCTGCGGCAAGTCCTACGGTCTGAAGAAGGCTCTGAGAGAGCATATGAGGATACATGAGAATGATAGGAGATTTAAATGCGAAAAGTGTGACCAGGCCTTCGTTCAAAAGTGCAGCTGGAAAGGGCATATGCGTTCTAAGCACGGAATTACAGTTTAA
- Protein Sequence
- MHKDIKNHILPFKFEGEELNCVLCSKTYYSFKLLQDHLHVHYENYTCELCNSSFINKRALINHKGRHKEGEFSCTTCSKVFDTREKTTSHEKLVHTLEQNKRNRCPHCDEKFANYTQRTRHLVEVHGVEPRVMKCPACDKIFDRRDSLNRHIKRDHLLERKYECDHCVMKFYRKKALINHMIRHTGRSEAADLACKILSEIKERPKTSKTPTPTSSKVDKEKNTNRVPKSETDAERIKKKSQKDYQEELFKQRYNIREILLCSNATPIRKYDIGYVCCFCEKQYPNAEELKTHTITEHDDSDKLDFMKGTRMLYFLVKLDITGLKCTLCEQDVDSVLSLIKHLKEEHGKPMFEDIKSYIIPFKFEDATLKCTFCPLIFNRFKVLQEHMYTHYQNFVCDVCGTGFVNEKMLNTHSDSHKVGVFRCGHCPEKFDTPRKKKYHEKTVHLLSLNKCGYCDKKFMWYRQKCAHIAEVHGIVVTQPKECKACDKVFPSDSKLQLHVRRDHLLERRFQCTECDMQFFTKESLNDHMVKHTGIKLFSCKVCGKSYGLKKALREHMRIHENDRRFKCEKCDQAFVQKCSWKGHMRSKHGITV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -