Hamb024112.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458993.1:3703016-3712661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00015 0.011 16.7 0.7 1 21 87 107 87 108 0.96 2 20 0.83 62 4.9 0.2 2 23 136 157 136 157 0.94 3 20 0.0045 0.33 12.1 0.2 2 23 180 201 179 201 0.97 4 20 0.00057 0.042 14.9 0.1 1 23 205 227 205 227 0.97 5 20 0.07 5.2 8.3 0.1 1 23 232 255 232 255 0.85 6 20 0.00025 0.018 16.0 1.0 1 23 261 284 261 284 0.97 7 20 0.00065 0.048 14.7 0.7 1 23 291 314 291 314 0.97 8 20 1.6e-05 0.0011 19.8 0.8 3 23 323 343 321 343 0.97 9 20 0.0073 0.54 11.4 0.6 1 23 423 445 423 446 0.95 10 20 0.56 41 5.5 0.1 2 23 473 494 472 494 0.95 11 20 0.06 4.4 8.5 1.7 1 23 516 538 516 538 0.98 12 20 0.17 13 7.1 0.2 1 23 588 610 588 610 0.91 13 20 0.00077 0.057 14.5 3.7 1 23 678 700 678 700 0.98 14 20 0.0011 0.084 14.0 0.2 3 23 706 726 704 726 0.95 15 20 0.00032 0.024 15.7 0.8 1 23 733 756 733 756 0.96 16 20 0.00016 0.012 16.6 1.6 1 23 762 785 762 785 0.98 17 20 0.04 2.9 9.1 1.9 1 23 791 814 791 814 0.97 18 20 0.00013 0.0097 16.9 0.4 1 23 820 842 820 842 0.97 19 20 4.9e-06 0.00036 21.4 1.9 1 23 848 870 848 870 0.99 20 20 0.0002 0.015 16.3 5.3 1 23 876 898 876 899 0.96
Sequence Information
- Coding Sequence
- ATGCCTAAGGGGAGACAAGAAGAACCGAGGAGAGACGAAAACAGAAACATTGCTAAGGAATCTGAcaaacattttctatttttaggaCAACCCTGGCAAACGAGCGAACAAAACCAAGATGATTacgaattagaaaaaatacccAAGCAGAAATATACTAGAAGCGCTAGAGCTGAAGCCAGGATTATCACCAAGAGTAATGCTTCATCTATCCTAGAGTGCTGGTCACTGCTACCTTTTAGATGGAAGAAAAACAGATTCAAATGCGCTTACTGCGAAGAAAACTTCACAGACTGCTCCGATTTACGAGACCACGTTCGCATATGCTCAGCAAGCCACAGCATCAAAGATATTTACAGCAAATTCAAAGAAATGCCCCTCATCAACGTTGATATAACAGACGCTGTCTGCTCCCTCTGCTCATTACCACTTACAAATGCAAGTCAAATACGAGAACATGTTATTCATCACGGTCTAGACTTCAATCCTTATCATCCTGATGGAATTTTACCATTTTCGTTGGACAAACAGTCTTGGAAATGTGTCATATGTCCGGAGAAATTCAATAACTTTTTGAAACTATATGAGCAtatgaatattcattaccagCATTACATTTGCGCTACTTGCGGTAAGGGTTTCATGACTGCGCCCAGATTAAGGAAACATTTGGAAGTTCACGTTTCTGGGTCTTTTCCTTGCAATAAGTGTGGGAGGATTTTTATCATGAGAGCAGCAAGGGACTCTCATAGAGCTTCGGTTCACCCAAAAGCGCCGAGATACGAATGCCCACATTGCAACATGCGTTTCGACAATTATTACGACAGAATTGATCATATGAAGATTGCTCACAGTGAGAGAGAAGTTTCTTACGCGTGCGCTCACTGCGACATGTCATTTAAGACTAGCGGAAAACGCGCAATACACGTCCGCACAGTACATTTCCCTCCACAACTAAATTACGGTTGCAGTTACTGTGAATGGCAATTCAGAACTAATTATGAGTTGAAAAGACACATGGTGCGTCATACTGGGGAAAAGAATTTCCATTGTTCCGCTAACGAAGCGGAGGGAAATCTAGGCGTTAGACGCATTAAGAAGTTGAAGGAGAACGTTAGTGAACGACAGATGCGCAGGCGGCGACGCGCCAACAACCAGCTCCCCGAAGAATCTGAGAAAAGAATATCTAAAACTATGATGCGTAGAAATGCTATGATCATTCTAGAATGTTCTACAGCTTGGGCTTTCAGATGGTTCCACAGTGCTTTTTACTGCTCGTACTGCGACGCTAAGTTCTTCGATGTACCCCCACTTCGAGCACATGTAAAAGTTCATCACCTAAACGCGAAACCTACGAACAAAATCTTCTCGaagttgaaagaaaacaatatgatTAAGGTCGATGTTGCTGAACTTAGTTGTAGGCTGTGTAACAGGCTCCTAAATAGCATAGACGCTTTAAAAGACCACTTGCTGATACACGGAAAGACTTTAAACATTGAGTACAGCGATGGAGTCCTACCATTCAAGCTAGATGAAGAAGGCTTCACCTGCCAGCTGTGCTTCGCCAAATTTATAACTTTCGGGAAGACAAACGAACACATGAATACTCACTTTCAAAATTACATTTGCGATTCTTGCGgcCCCGTCGAACTCACAGTAAAATGGAGGCCGAAACGCAAGTATAACGATCACAGAGATAACGCTGCTATCATTCTAGAATCTTCCAACGCTTGCCCCTTTAGGTGGAAGCGGGGGGCATTCACTTGTGCTTACTGCCCACTCTCTTTCGGAGATTTCAATGGCGTCAAGAACCATTCCATAGAACACCCTGATAGGGTCGAAGCTCTCCGCTTCGCTCGAACGTTCTCAAACGTCAAAATTGAAGTCACAGAATTGCGATGCGAATTATGTCTCACACGGATGTCGGACATTGATAGTCTTTGTgaacatttaattgaaaatcatAACAAACCAATAATTTCTAAGCACGGGTTAGGAGTTACCCCCTTCTATTTAACAAGAAAAGAATACAACTGCACTCATTGCGATGAAACTTTCGAACTTTTCTCTAAATTGAATACACATTTGAACAAGCATTATCCTAACAGCATCTGTTTTCAATGCGGTAAAGCTTTCTCTTCCGTTGACAGGTTGAAATCCCATTTAGTCATCCACGATTCCGCAGCAGAACAATACAAATGCACAAAATGCGAGCAGGTTTTTTCCACACGTGTCTCAAGGAATAATCATATAACTGTAGCTCATGGTCCGGAGTATAGGTACAGGTGTCCTTATTGCAAAGAGTCCTTCAAAAGTTACGCTGGCAGGGTCAAGCATTTGAAGACAACGCATGATATAAAAGTAGAGTATCCTTGCAAGCTTTGTACAGCCGTCTTCGCCATGTGCAATCAGAGGACCAAACATATGAAACAAGTTCATCTAGGAATCAAGTCCTTTGCGTGCAATTTTTGCGCGTACAAATTCGTTACTGCTGCTCAATTGAGGAATCATATGATTAAACATGTCGGGGAGAGAAAATTTCAATGTCAGGTCTGTAAAAAGTCTTATGCGAGGACCAAGACTTTGAGAGAACATATGAGGatacataataatgataaaagatTCGTTTGTCAGTATTGTAATAATGCGTATGTTCAAAAATGTAGTTTGCAAAGTCACATGAGAACGCATCATCCAACAGCGGAGCCTCTGAAAAAGATTAAGTTATCTAATTTGTATTGA
- Protein Sequence
- MPKGRQEEPRRDENRNIAKESDKHFLFLGQPWQTSEQNQDDYELEKIPKQKYTRSARAEARIITKSNASSILECWSLLPFRWKKNRFKCAYCEENFTDCSDLRDHVRICSASHSIKDIYSKFKEMPLINVDITDAVCSLCSLPLTNASQIREHVIHHGLDFNPYHPDGILPFSLDKQSWKCVICPEKFNNFLKLYEHMNIHYQHYICATCGKGFMTAPRLRKHLEVHVSGSFPCNKCGRIFIMRAARDSHRASVHPKAPRYECPHCNMRFDNYYDRIDHMKIAHSEREVSYACAHCDMSFKTSGKRAIHVRTVHFPPQLNYGCSYCEWQFRTNYELKRHMVRHTGEKNFHCSANEAEGNLGVRRIKKLKENVSERQMRRRRRANNQLPEESEKRISKTMMRRNAMIILECSTAWAFRWFHSAFYCSYCDAKFFDVPPLRAHVKVHHLNAKPTNKIFSKLKENNMIKVDVAELSCRLCNRLLNSIDALKDHLLIHGKTLNIEYSDGVLPFKLDEEGFTCQLCFAKFITFGKTNEHMNTHFQNYICDSCGPVELTVKWRPKRKYNDHRDNAAIILESSNACPFRWKRGAFTCAYCPLSFGDFNGVKNHSIEHPDRVEALRFARTFSNVKIEVTELRCELCLTRMSDIDSLCEHLIENHNKPIISKHGLGVTPFYLTRKEYNCTHCDETFELFSKLNTHLNKHYPNSICFQCGKAFSSVDRLKSHLVIHDSAAEQYKCTKCEQVFSTRVSRNNHITVAHGPEYRYRCPYCKESFKSYAGRVKHLKTTHDIKVEYPCKLCTAVFAMCNQRTKHMKQVHLGIKSFACNFCAYKFVTAAQLRNHMIKHVGERKFQCQVCKKSYARTKTLREHMRIHNNDKRFVCQYCNNAYVQKCSLQSHMRTHHPTAEPLKKIKLSNLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -