Hamb012542.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hoplodrina ambigua
Gene Symbol
-
Assembly
GCA_949774945.1
Location
OX458974.1:5091601-5104797[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.2e-05 0.0068 17.4 2.2 1 23 431 453 431 453 0.97
2 20 0.0048 0.35 12.0 0.6 1 20 459 478 459 481 0.94
3 20 2.4e-05 0.0018 19.2 5.6 1 23 500 522 500 522 0.98
4 20 0.00011 0.0082 17.1 4.1 1 23 528 550 528 550 0.99
5 20 4.2e-05 0.0031 18.5 5.3 1 23 556 578 556 578 0.97
6 20 9.7e-06 0.00072 20.5 7.4 1 23 584 606 584 606 0.97
7 20 8.2e-07 6e-05 23.9 2.9 1 23 612 634 612 634 0.97
8 20 0.00012 0.0086 17.1 6.7 1 23 640 662 640 662 0.97
9 20 0.00012 0.0085 17.1 6.5 1 23 668 690 668 690 0.97
10 20 5.6e-07 4.1e-05 24.4 1.9 1 23 696 718 696 718 0.98
11 20 1.1e-05 0.00081 20.3 7.7 1 23 724 746 724 746 0.98
12 20 2.9e-05 0.0021 19.0 6.6 1 23 752 774 752 774 0.98
13 20 2e-05 0.0015 19.5 4.0 1 23 780 802 780 802 0.98
14 20 7.6e-06 0.00056 20.8 5.0 1 23 808 830 808 830 0.96
15 20 1.2e-05 0.00092 20.1 5.2 1 23 836 858 836 858 0.98
16 20 2.8e-05 0.0021 19.0 6.1 1 23 864 886 864 886 0.98
17 20 6.8e-05 0.005 17.8 7.9 1 23 892 914 892 914 0.97
18 20 2.8e-05 0.0021 19.0 7.7 1 23 920 942 920 942 0.98
19 20 0.00083 0.062 14.4 0.3 1 23 949 971 949 971 0.96
20 20 0.36 26 6.1 4.9 1 23 983 1005 983 1005 0.99

Sequence Information

Coding Sequence
ATGAATCAGGAGCAACATAATATGCATACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCACAGGTCCAAAGAGTTCAGGCCACCCAGCAACAGCAGCAAAATAACTTGCCTGCCACGACATCTGCTACTGATCTGCGAGTTAACTCGGCGGCAGTGAACGTTGCTTTGTCTAGTGTCGCAAAATATTGGGTGTTTACAAATTTATTCCCCGGACCGATACCACAAGTTTCTGTGTACGGATTGCCTGCCGGAGCCCGAATTGAGAATGGGAAGCCTGTCCAGGATCTGGGTCAAGCTCATGCAAGTATATTAAATGGGGATCCAAATATTATACTTGGGCATCATGCAGGACAGTCCCAAGTCACAGTATCTGCTGCCGGTGGTCAGCAGATACCAGTCTCTCAAATCATTGCCACACAGTCTGGACAAACGCATGAAGCACTTGTGGCCCATAGTCAGCAGCAAGCCGAGCTGGCTGCTGCCCAGGGCTCTGCCAACAATGCCCAGGTGTCAGTTAGTGCTGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGGCACCATTCACAACAACACATAATGCAGCAACAACTAATGGCGCAGGCGCGGCCAGAACACAGCAACCAACAGATCCAACTAACAGTCAGCGAGGACGGCATAGTGACAGTGGTGGAACCAGCTGGTAATAAAATGGTGGATAAGGAGGAACTTCATGAAGCCATCAAGATGCCCAACGACCATACCCTCACCGTGCATCAGCTACAGCAAATAGTGGGACAACAGGTAATAGACAGCGTAGTACGGATAGAACAAGCGACTGGTGAGCCGGCGAACATCCTTGTAACCCATAATCCTGACGGTACGACCTCCATAGAAGCCAGTGCAGCCGACCCTCTGATTGTCAAGGACGAGAAGAATTCTAACAAAATAGAGACTGCACAGTTCGCTATACCTACTGAAATAAAGGATATAAAGGGAATTGATTTGAAGAGTGTAGGAGCCATGGGCATGGAAGGTGCTGTAGTAAAGATCTCAGCCGGTGCGTCAGAACACGACCTCCACGCGATGTATAAAGTCAACGTGGAAGATCTGTCACAATTGCTTGCTTACCATGAGGTGTTCGGAAAACTTAATTCGGAAGGCCAGCAGCAACAAGCAAAGGCAATAAACGATGTGGATGTCGAAGTTGAAGCAGGCACCAGCGCAGCTATGTCAGAAGCCGAATCCCCACCCGGCCACCACTCATGTGATATTTGCGGAAAAATATTCCAGTTCCGATACCAACTTATCGTTCATAGGCGTTATCATGGCGAAAGTAAACCATTCACGTGTCAAGTTTGTGGTTCCGCATTTGCAAATCCTGTCGAATTGTCGAGGCATGGAAAATGTCATCTTGcTGGAGATCCGAACGAAAGGCACGCCAAGAGGATGGCGCAAGATAAGCCGTACGCGTGCACCACTTGCCACAAAACTTTCTCTCGTAAAGAACATTTGGACAATCACGTCCGAAGCCATACTGGAGAAACTCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACCCGCAAAGAGCACATGGTCAACCACGTACGAAAACATACGGGCGAAACTCCGCACCGATGTGATATTTGCAAGAAGAGTTTCACCAGGAAAGAGCACTTCATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACCCCGCACCGCTGCGACTTCTGTTCGAAAACATTTACCCGCAAGGAGCATCTCCTCAACCACGTCCGCCAGCACACGGGAGAATCTCCTCATCGCTGCAACTTCTGCAGCAAATCGTTCACGCGTCGAGAACACCTCGTCAATCACGTCCGCCAACACACCGGGGAAACACCCTTCCAGTGCGGATACTGTCCGAAAGCCTTTACTAGAAAGGACCATCTCGTGAACCACGTTCGTCAGCATACAGGCGAATCCCCACACAAATGCTCGTACTGCACAAAATCGTTCACTCGTAAAGAGCATTTGACGAATCATGTGCGACAACACACGGGCGAGTCTCCGCACCGCTGTACTTACTGCGCCAAGTCCTTCACGAGGAAGGAACACCTCACCAACCACGTTAGACAGCACACGGGAGAAACACCACACAAGTGTGCGTACTGCCCGCGAGCGTTCGCGCGCAAGGAGCACCTCAACAACCACACGCGGCAGCATACAGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGAGTTTCACTAGAAAAGAACACCTCGTTAATCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTCTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACAAACCACGTGAACCTTCACACAGGACAGACGCCTCACAAATGTGCTTTCTGCACAAAAACGTTTTCCAGGAAAGAACATTTGACCAACCATGTCaggATTCACACGGGCGAATCTCCGCACCGCTGCGACTTCTGCCAGAAGACGTTCACGCGGAAGGAGCACTTGACTAATCATCTGAAGCAACATACCGGCGACACCGCACACGTCTGCAAGGTCTGCTCGAAGCACTTTACCAGGAAAGAACATCTCGTCACGCACATGAGATCGCACAGTTGCGGCGAGCGTCCATTCAGTTGCGGCGAATGCGGCAAATCTTTCCCGTTGAAAGGCAACCTACTATTCCATGAACGATCGCACAACAAAAACAATGCTAATGCTGCCAATAAGCAGTACCGATGTGAAGTCTGCTCCAAGGAATTCCTCTGTAAAGGCCATTTGGTATCTCATCGACGCACACACGCGGAATGGACGGAAGGTGCCGCGCCCGGTGAAACACCAGCCGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTTGAGCCAGATCGAACGGAGAGGAAACATGAAGTCAGGACGACAGTCGAAACGAGACCAGCTGAGAGCAATGTCGCACAAAGTCAACCAAACGCGCCTACTGTGATGATAACTAATAATCAACAAGTCCGCGCAGCAGGCGTGAGCACGGTGGGTGCTGTGAACGCGGTGGGCGCAGTGAGCTCGGGCGGCGCGGGGGTGGCCGGGGTGGCGGGCGTGACGGGTGTGGCGGCTACGTTCGCTCACAGCGTGGCCGCGCAGCACCACGCTGGCGCCAACATCGCGCACCACCCCGTCACCGTTAACTACTAG
Protein Sequence
MNQEQHNMHTGGGQPPGSSESQVQRVQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHSQQQAELAAAQGSANNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMAQARPEHSNQQIQLTVSEDGIVTVVEPAGNKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNSNKIETAQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKAINDVDVEVEAGTSAAMSEAESPPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCAYCPRAFARKEHLNNHTRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGQTPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANAANKQYRCEVCSKEFLCKGHLVSHRRTHAEWTEGAAPGETPAETEDCTDNKCIKVEPDRTERKHEVRTTVETRPAESNVAQSQPNAPTVMITNNQQVRAAGVSTVGAVNAVGAVSSGGAGVAGVAGVTGVAATFAHSVAAQHHAGANIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-