Hamb010022.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458970.1:15139798-15141807[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 8.4e-07 29.2 0.2 4 37 35 68 32 76 0.89
Sequence Information
- Coding Sequence
- ATGTACTATATACCGAGGTGTACAAATAGCAAacaTAACATCATGGAAAACGAATCACCAGCTTCTACCACAAGGAAAAAGAGGGCTCAATGGACTTCACAACAGATGGAAAACGCTGTTAAAATGGTAGAAAGAGGTATATTATCTACATATGCTGCTGCAACCAGATACAACATCCCAAGAAGAACTCTACGCAACCATCTAGCGAGTGGGTCGACTACACGAAAGCTAGGTCGGTCGGCTACATTGACTACAGAACAAGAAGCTGGACTTGTCAGAAGAATCATACGTTTGGCTGATGTTGGAGTGCCGTTGaataactttaactttttaacTCGTTAA
- Protein Sequence
- MYYIPRCTNSKHNIMENESPASTTRKKRAQWTSQQMENAVKMVERGILSTYAAATRYNIPRRTLRNHLASGSTTRKLGRSATLTTEQEAGLVRRIIRLADVGVPLNNFNFLTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157619;
- 90% Identity
- iTF_00717702;
- 80% Identity
- -