Hamb003304.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458964.1:11981029-11982067[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 7.3e-07 29.4 0.1 1 38 16 54 16 57 0.93 2 2 4 2.2e+03 -1.0 0.0 8 16 107 115 105 123 0.77
Sequence Information
- Coding Sequence
- ATGCCACGTAAATACTTCCGAACCTCTTCGCGGGCTACTTCCTACACTAAAGAAGAGCTGCAATTAGCcatacagaaaataaaaaacaaggaGCTCACCTATGCAGCTGCTTCAAAAATGTACGGCATACCTACATCCACACTTAGTGATAAAATCCTGAAGAAAACAGCAATAcctCACGTGCACAGCAGCTGGTTTGTTCTAGAAAATTATGCCGAGCAGGCGCGGGTGAAGCACGAACACAGTCACAAATACGTGCGAAGCAGTTCAAAGCGCTTAGCGGcggatttttatatattaactgTCCGAAAGAATGGAGCAGTAGCGGATTGTCGATCTGGTGACAGCGCATCAACCAAGACGGCGGGAGCGAGCGAGCGCCGCATGAGTCCAAACAGGAACGCGGCGTACGGAACACTGGTGATTGGACCGTTTTCTCACAGGCGCGCGCGTCATGATTCCCGTACATAG
- Protein Sequence
- MPRKYFRTSSRATSYTKEELQLAIQKIKNKELTYAAASKMYGIPTSTLSDKILKKTAIPHVHSSWFVLENYAEQARVKHEHSHKYVRSSSKRLAADFYILTVRKNGAVADCRSGDSASTKTAGASERRMSPNRNAAYGTLVIGPFSHRRARHDSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -