Hamb020161.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458985.1:2159585-2160229[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-06 0.0031 17.8 0.0 17 37 1 21 1 23 0.94 2 2 0.00049 0.27 11.6 0.1 2 29 186 213 185 214 0.86
Sequence Information
- Coding Sequence
- ATGGGTTTGAAAAAAGCGGTCAAGCTTTATAATGTTCCAAAAACTACTCTGCAAAGGTTTGTGCACAGTGACCAGCCTCCCGATGAGGTTGTAAATACTACTATAGGAAGAAGACCTGTCCTGCCATCTCACCTTGAAGAAAGCCTTGTGTCATACCTTCTCGTTATGGAAAGTAAATTCTATGGCTTGACCCGTCAGGATGTTCGTAAAATGGCCTATCAGTTGGCTGTgaaaaataatgtcgaacattcgTTTAGAAATAACATAGCCGGTCGAGCTTGGCTTGATCATTTCTTATTACGCCACAAAGATATGCTTTCTATTCGATCACCAACAGGAACTTCCAATGCTCGGGCTCAAGGTTTCAATAAAGAAGCAGTGGATAAGTTCTTTGACATCCTTGAAGAAGAAttccaaaaacataattatccaCCAGAGAGAATCTTTAATGTCGACGAAACCGGGCTATCTATCGTGCAGAGTAAAATGGTTAAAGTTTTGCTAAAATACTTAAGAAACAAAGTAGGTTTCCATATTACCACCCCTTCCTCTAGTGATGAAGACCTTGCAAAAGCCGTTGCAGAAGTGAGAGCCGGAACAATCTCCCAGGCAGGTGCTGTTAAGATTTTGGAAGTACCAAATTAA
- Protein Sequence
- MGLKKAVKLYNVPKTTLQRFVHSDQPPDEVVNTTIGRRPVLPSHLEESLVSYLLVMESKFYGLTRQDVRKMAYQLAVKNNVEHSFRNNIAGRAWLDHFLLRHKDMLSIRSPTGTSNARAQGFNKEAVDKFFDILEEEFQKHNYPPERIFNVDETGLSIVQSKMVKVLLKYLRNKVGFHITTPSSSDEDLAKAVAEVRAGTISQAGAVKILEVPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127245;
- 90% Identity
- -
- 80% Identity
- -