Hamb024349.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458994.1:684193-705182[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.012 6.5 7.2 0.0 8 42 223 256 219 258 0.86 2 2 2.6e-10 1.5e-07 31.6 0.2 4 42 511 548 510 549 0.94
Sequence Information
- Coding Sequence
- ATGAAggaaattaacataaatatagaAGGCTATAACGTTAACGGGATATGTGTTGGTTGTTTGAACTATAATCGTCGAATGTTTTATCATCCTAATATTAAAGAATGTTTTCGGTTGCTTGCAAATATTGATGTACCAGATGGCCTGGAGGTTCAGGTGTGCTGGGAATGCATGGCTCATGTGAAATCCGCCATCAAATTCAAGGAACGCGTAACAAAATCTTACGACTTTCTCATCGCGTACTCTCAAAAGcatACATTTTTGGATTCACCGAGTTATTTTGAACCTTATGCAAGCAGGAATATTGAAAGAACAGAGGTGGAATGTTACTCATGTGTGACAGAGACAGTAGACGAAGAAAAAGAATCAGATGTTAAAGATGAGAAAGAGACAGAAGATAAATTTACTTTTGAGTTAGCTATTAAGGAAGAAGAGACATTTGAAGACACATACTATGAAGATGTACCAATCATAGACAATGATGAACCGGTCATAGACAATGATGTCACCACAGACGAGGATGTGCAGCTTTCCAAACTTAAGGAGATTGAGACGGAGAAGGTGAAGAAGAAGAGGCAAAAGGAGATGAATAGGATTCCGGGCAGAGCTGGCAGACGCTCGAAAATGTCCAAGGACACTGAGGGAAAAGCCAAGTTGTATGAGGCGGCTTATGCTGAGATACTCAAGGGGAAGTCAGTAAGAAAAGTAGCGAATTTGTTTGGGATCAAATACGTTTATCTTCAAGAATACAAGAAAAAACATCTACCCACAAATTTTCCCCTAAGAACACCTTATTCTGGGAACTCTTTTTTCACCACAGACCAGGAGAATCTCCTCAAAGTATATCTAGGAAAATATGCGGAGATATATCCCGGCATTTCCATGAAAGTAGTCAGAAAATATGCTTCGGAATTAGGTCAGAAACTCGGTCTGAAACGACCTAAATCTTGGATTACCAATGAAATGGCTGGCATGGATTGGTATAAAAAtttcatgtacaaaaataaagattttgaaGACAAAATTACTAAATCTGCAGCTGAAGAGAAGGTTAAAGATTTTTATGATCGATTGTGGAGTGTTTTTGTTAAAGAAAATCTTTGCTCTGAAAGCATATATTGCATAACTGAAATTGGTGTTAATATCGAAGAGTTTAGAGACAAAATTTGGTTGATAACGACCCAGAACGGTCCGGTAGCCTTGAAGGGGTCGCAGGTACGATTTGCTTACGCAGCAAACGCCAAAGGATATGCAGTCCCTCCACTCTTTTTACTACCACAAAAAGAAGACGAAAACCCGCAAACAAAAACAGAAGTCAAAACGGAAAAAATTGACGAAGTTGAAGTCAAAACGGAATGTTTTCTAGAAATAGAAGTCGATACAGAAACTTGCTATACTTCAAACGAGACAACGTTCAATAGTCCTTCAAAAAATACCTTAGATTTACCGCATTTGACGACCGATTCCGactttttgATGCCAACGAACAAACGGCCGAGAAAGACAACGCGAGGTCTGACCGATGTATCGCAGTTTGAGGCTGCATACGCGGAAATCCTCAATGGCAAATCTTTAAGGCAAGCTGCAAAACAGTATGGCATAAACCACATCACTCTCCAACGCTACAAGAAAAGACGAGTACATAGCTACTTCCCCCTTAAAGTGGGGTATGCTAGCAACAATTACATGACTAAAGACCAAGAGAGTATTCTGACAAAATATCTAGAAGATTACGCTGAAATATATCCATATCTTTGTACTAAAGTAGTCAGAAAATACGCAGCAGAATACGGTCAAAAACTCGGTATTAAAGTGCCGGATTCTTGGCTTAATAATGGCATGGCTGGAATGGATTGGTACAAGAATTTTATGCACAGAAATAAAGGCTTAGAAAGTAAGACAAAAAGGTTATCTTCAAACGAAAAACTTAGAATTTTCTATGATCGATTGTGGTTCATTTTTGTCCAATATAATTTTTGTCCGGAAAATATATATGCTATGGCGGAATTGGGTGTTAATATTGAAGACTATAGGGACAAAATTTGTTTGTTGAATACCAAGAATAGTCCTATAGCTTTGAAGGAATCGCAAGTGACGCCAAAACGTCAGAAGACCAAGAAAGAGAAGGCTCCCGACAAGAAGAGTAGGAAGCTAAAGAATCTACCAGAAGATCTGGTAGAATTGTACACCATGAGCCAGGATGAAATGTGGGGAGTCAGGATTGAGGATCTTAATAGCAAGGAGTTTCAGAAGTTGAAGTATAGGTGCGACGATTGTATAATTGCATTCAACACTGAAAAACTGAAACACGATCATTTAAATGGAAAGCATCAACCTaaaaGCGATGACTGTCATCAATGTCCTATATGTCAAGCCTACTTCCTAACCAAAGACAATGTGGCGGCACATAAAGCGTTGCACCAACAAGCATACAGATGCAGAGAGTGCTGGTTCACTACCTCGCTGAAACGACGCATGTTGAAACATGTCGCCACTCATGCGCCGACCGGAGACGCTCATGTCTGTCAAACTTGTGGAAGTAGCTTTAGcacAAAATCGAAGTTGACATATCACCGGGGCGTGTGTCGCCAGGAGAAGCCGCAGTGCGACTGCTGTGGCAAAGTGTTTGCTAACAAAATGACACTCAAATATCATCTCAAaattctGCCACAGAATAAGCCAAAAGAGAAATTGTTTATACCATGCAAGGGATGTGATAAAGTGTTTCATTCTAAGAAGAGCTACAGGGCGCATGTCGTCATCCACGATGGACTGACCTACCCGTGTCCTATCTGCGGCAAGCTTTTCCAATGGAAACGTAACCTAGCGCGGCACTCGCGCAACCACCGCGAGCGAGAGGCTGGCAACTTGCACGAGTGTCGCGCTTGCAGCAAGACTTTCGCAAGCAGAGATTGCTACAACAATCATATGCGGCTCAGCAAGAAGCACGTGTCGCAAGACACTTACCAGCATGAATGTAATTACTGTCTAAAGAAATTCGCTTCGAAATGGTGTCTCACTGACCATATTGATTGGGATCATTTGAAGCGAATCAAATATCAGTGCAGCTTCTGTTTCAAGGCATTTAAAACAGCTAAAATATTAGTTGCTCATGTCAATAATATACATGAAGGGAAGAAGAAAGAGGCGGAAGGTCAACATCTGTGTGAGATCTGTGGAAAGTCATACAGGACTGTGAAGCGTCTAAAAGGCCATGTATGGGCGATGCATACAAAACGTTCAAGCAGCAAGATATACAAATGCAAGCTCTGTCCGGCGACGTTCATGTGGCAGACCAGCATATACAAGCATATGAAGATGATGCACGATATTAATAAGAAGACTAAGCCACCTCGCTCCGTCGCGCCTGTAAAGAAAGAAGAGCCTCATCCGGGCATCGAACTGGCGAACCGCATGCAGTACTTCCAGCAGAATACTTTTAATATAGTTCACATTCAACCTTTGCCGgtaaatcaaaatattgttccttaa
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRRMFYHPNIKECFRLLANIDVPDGLEVQVCWECMAHVKSAIKFKERVTKSYDFLIAYSQKHTFLDSPSYFEPYASRNIERTEVECYSCVTETVDEEKESDVKDEKETEDKFTFELAIKEEETFEDTYYEDVPIIDNDEPVIDNDVTTDEDVQLSKLKEIETEKVKKKRQKEMNRIPGRAGRRSKMSKDTEGKAKLYEAAYAEILKGKSVRKVANLFGIKYVYLQEYKKKHLPTNFPLRTPYSGNSFFTTDQENLLKVYLGKYAEIYPGISMKVVRKYASELGQKLGLKRPKSWITNEMAGMDWYKNFMYKNKDFEDKITKSAAEEKVKDFYDRLWSVFVKENLCSESIYCITEIGVNIEEFRDKIWLITTQNGPVALKGSQVRFAYAANAKGYAVPPLFLLPQKEDENPQTKTEVKTEKIDEVEVKTECFLEIEVDTETCYTSNETTFNSPSKNTLDLPHLTTDSDFLMPTNKRPRKTTRGLTDVSQFEAAYAEILNGKSLRQAAKQYGINHITLQRYKKRRVHSYFPLKVGYASNNYMTKDQESILTKYLEDYAEIYPYLCTKVVRKYAAEYGQKLGIKVPDSWLNNGMAGMDWYKNFMHRNKGLESKTKRLSSNEKLRIFYDRLWFIFVQYNFCPENIYAMAELGVNIEDYRDKICLLNTKNSPIALKESQVTPKRQKTKKEKAPDKKSRKLKNLPEDLVELYTMSQDEMWGVRIEDLNSKEFQKLKYRCDDCIIAFNTEKLKHDHLNGKHQPKSDDCHQCPICQAYFLTKDNVAAHKALHQQAYRCRECWFTTSLKRRMLKHVATHAPTGDAHVCQTCGSSFSTKSKLTYHRGVCRQEKPQCDCCGKVFANKMTLKYHLKILPQNKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHREREAGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTYQHECNYCLKKFASKWCLTDHIDWDHLKRIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGQHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDINKKTKPPRSVAPVKKEEPHPGIELANRMQYFQQNTFNIVHIQPLPVNQNIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809583;
- 90% Identity
- iTF_00809583;
- 80% Identity
- iTF_00809583;