Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0081 2.7e+02 2.6 9.5 12 19 36 43 35 43 0.89

2 8 0.056 1.8e+03 -0.1 1.1 8 13 48 53 47 54 0.77

3 8 0.25 8.1e+03 -2.2 0.3 6 10 69 73 68 74 0.77

4 8 4.9e-08 0.0016 19.2 21.4 1 19 79 97 79 97 0.99

5 8 0.017 5.6e+02 1.5 0.9 6 10 122 126 121 127 0.91

6 8 1.8e-09 6e-05 23.8 17.6 1 19 132 150 132 150 0.99

7 8 0.21 6.8e+03 -1.9 0.4 5 10 174 179 174 180 0.73

8 8 2.1e-06 0.07 14.0 9.1 1 16 185 200 185 201 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0081	2.7e+02	2.6	9.5	12	19	36	43	35	43	0.89
2	8	0.056	1.8e+03	-0.1	1.1	8	13	48	53	47	54	0.77
3	8	0.25	8.1e+03	-2.2	0.3	6	10	69	73	68	74	0.77
4	8	4.9e-08	0.0016	19.2	21.4	1	19	79	97	79	97	0.99
5	8	0.017	5.6e+02	1.5	0.9	6	10	122	126	121	127	0.91
6	8	1.8e-09	6e-05	23.8	17.6	1	19	132	150	132	150	0.99
7	8	0.21	6.8e+03	-1.9	0.4	5	10	174	179	174	180	0.73
8	8	2.1e-06	0.07	14.0	9.1	1	16	185	200	185	201	0.94

Coding Sequence: CTGCTCTGTGTACAGAGATGGGCCAAAGACAGCATAGCTCATCAGAAAGCTGCCCTGGATGATAGACCAGCTGGCCATAAATCATCATTTACACCAACTTCATGTGCAGGGCCATGTCCACCGTGCCCAAAAACAGTAAAGAGCACATGCCACTGTGGCAAGAGTGCGCCAAGACCACAGCGATGCAGCAATAAGCATTGGTCGTGTGCCCAAGCTTGTGGACAGCTGCTAGGCTGTGGCAGGCACCCTTGTGAGCAGCATTGCCACACCGGTCCCTGCCCCGAGTGTCCTAGACGCTCTACTCAAGCTTGCATGTGTGGCCGAGAACAGCAGCTACGAGAGTGTGCCAGTCCTAGCTGGCAGTGTCAACAGGTGTGCGGCAAGCGCCTTTCGTGCGGACACCACAAGTGTGAACTGGTGTGCCACAAGGGTCCCTGTGGGGACTGTCCTCGCAGTCTGCCCCGGCCATGTCCGTGTGGCAAGTCTCAGCAGATCCTGCCCTGCACACAGGACGTGCCGACATGCGGAGACACGTGCGGCCGAACTCTGGACTGTGGTATACACCAGTGCTCACAGCGCTGTCACAAGGACAAGTGTGGTGTT
Protein Sequence: LLCVQRWAKDSIAHQKAALDDRPAGHKSSFTPTSCAGPCPPCPKTVKSTCHCGKSAPRPQRCSNKHWSCAQACGQLLGCGRHPCEQHCHTGPCPECPRRSTQACMCGREQQLRECASPSWQCQQVCGKRLSCGHHKCELVCHKGPCGDCPRSLPRPCPCGKSQQILPCTQDVPTCGDTCGRTLDCGIHQCSQRCHKDKCGV

Sequence clustering based on sequence similarity using MMseqs2