Hvit000697.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961497.1:4995106-5003186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.064 8.9 7.8 3.2 1 23 114 136 114 136 0.98 2 13 0.00057 0.079 14.3 0.2 1 23 204 227 204 227 0.97 3 13 0.043 6 8.4 0.8 2 23 399 421 399 421 0.95 4 13 0.00024 0.033 15.5 0.4 2 23 569 590 569 590 0.98 5 13 0.24 33 6.0 0.2 5 23 603 622 594 622 0.86 6 13 7.3e-05 0.01 17.1 2.4 1 23 730 753 730 753 0.97 7 13 0.036 5 8.6 1.8 1 20 761 780 761 784 0.88 8 13 0.078 11 7.6 2.2 3 23 790 810 788 810 0.83 9 13 2.3e-06 0.00032 21.8 1.0 1 23 818 840 818 840 0.98 10 13 0.00011 0.015 16.6 1.4 2 23 847 868 846 868 0.97 11 13 0.0071 0.99 10.8 2.5 1 23 876 898 876 898 0.97 12 13 0.14 19 6.8 1.3 1 21 904 924 904 925 0.94 13 13 0.045 6.3 8.3 2.9 2 20 931 949 931 951 0.94
Sequence Information
- Coding Sequence
- ATGGAGCATACAGGAAATGTGTGTTTTGTCTGTGACAAGACGATACATTCTGAGAAATGGATGTATAAGCTTCAAGAGACTGCTACTAAGAAGCGCAATGTCCCTGTGGTGGACCTCATCAAGCAACTGGTAGGAGACGAGTACGTAGTGTTTGTGGGTGAACAGGACGCCATTTGCTCTACATGTATGAACATGCTCAATCTCATGGATTCCCTCACTGCTCAACTGGGGGAGGTGCAGAGTACGCTCTCACACCTCCTGCATTCCAAGTATGACTTGGCTTCAGATACTGTTAAGATCCAGTATGATGATACAAAATTAGAAGAAGCTGAACCTATTCACAAATGTGAGACTTGCAACTTTGAGACCAAGTATGAAAAAGAGTTCAACATGCATGTGCGTATTCATGAAATCCTTACATCACCCGTCAAAACACCTCCTAAATCTGTAGAATCAAATATTTTGCCTAAAGTAAAATCTTCTAAAAGgattaaaggtaaaaaattaaaaggttctACGCCAAGGTCTGTTGCTAAACAGAAAAAATCTCCTCAGAAAAAAACTCCTAAACAAAAGAAAATTCCAAAACCAAAGAAGACTAAGGTGGTTTATCAGTGTAGTATCTGTGACAAAATATTTCCAGAAGAAAGTAAGATAAGAGAGCATGCAAAAAAGGAGCATGGAAATGATAATATTGTAGTTAGTGATGAGGAAGAATATGAGGATATTCAAACCCTAGAGTCAGATGAAGAAATACCTATTAAAAAATCCCCTGTTAATAAAAACCTATCTTCGAAAAAGAAATTGACTTCAGAAAAAAAGCCACCGCCAGTTAAGAAACCATCCTCAGAAAAGAAACCACCTTCAGGAAAGAAACAATCTGCAGAAAAGAAACAATCCCCAGTAAAGAAACAATCTGTGGCAAAGAAATTATCTTCGGTAAAGCAACAATCTGCTGAAAAGAAACCTCCTCCAAAAAAGAAACTGCCAAAGAAACAAAGCAAGAAGAAAATACAGTCTAATACCAGAAAGAGTGATCTAGATTTTCTTGATGATTGGGAAGAAGATGATGAGAATGGTGATATTCCATCtcctattaaaaaacctaaaattgatGTTTCAGATACTGAGACAACCCAGCGAAAGTCTGTGGACGAGATTGAAGATGACgataaagataatgttactaaACCTACATGTATGTTTTGTAAAGCTACATTTTCTACATTTGAATCGGTTCAAGATCACATTAAACTGTCACATGGTAAGCAGTCTTCTCACTGGAGTGTTGGACCAAAAATTGTTGCTGCAACACAAGGTAGCATTGCAAGTTTTGAAATAGATTCTACTACTGATATTTTGGACAAAAAACCTACGTTGGGTATTGACATTAAGCTCAAAAATCATGTGAAAAAAGTGCATTACAATAAGGCAAAGATAGATCCCAGACGAGATATCAAAAATAACACTCATCCATCAAAAATTGTGCAAACCCCAGTTGTAAAAGCCAGCaatagtaagaaaatatcatCTTCTATGAATGCTTTGGAAATAAGCATTAGTGAGGTGTCATCTACAagtttttatactgaaaaaactTTGGAAAAGGAAAACCCTTCTGTGAATACTGACATAAGCGATGAAGGAAAACAAAAAGAAGAATTTCAATCTAGCACACATTTATCTCGTAAGAAAGTAGTACCAACATGTGAAGAATGTGGAATTACGTTTCTGAAGCAAAGTACACTTATAGATCATATGAACAGACATAAAGCAAAAACTTGTTGGAATCTAGGTATATGTATTTATTGCAGCAAACTGTTTGTTGACAAAGAACAACTTGCTTTACATACTGATCTTATCcactcaaattttaaaagtaaaccagCACTTTGTGAACCTTGTTGCAAAACTTATTTACATGGGAAAGATTTGAAAAACCACTTCTTAAAGATGCATTTCAGTGAAAAGACTGAGAAACTTATGAAGCAAATGAGTGAACATACTTTGACGAATGACGATGATAATGATGTTTACAGTAAAGTTTTCAAAGAGTTGCAGTCGATAACTGGAGAAGGAAATGAAAGTGAAGACTCATTGAGTAAGAAGTGTGTAGAGTGTGGGGATAAATTCCATGATGATATCCATTTACGTTTTCATTACCAGATGTCACACGAAATGAAGCCTTTCAAGTGCAGTATGTGTGTTAAAACCTTTAACAACAAGAAGACTTTGGTAAAGCACGAGTCCACAATGCACAGGAAAACATCCAGACCAGTCTATTTTTGTAGCGAGTGTCCAAAAAGTTTTCATTCAGAAAAGCGATATCAGATCCATGTGGGATTTGCTCATCGTCCCATTATGAACTGTAAATATTGCGATAAATCTTTTACAGAAGTAAATAAATTGGCTTTTCATGAAAGACATCATCTAAAGCAAGTAAAGAGCATCTATAAATGCAATGTTTGTGGAAAAGTGCTAAAATCACAATCAGCTCTTAAAACTCATAAGAACAATCACACAAGCAATAACTCTATGCAGTGTGAAGTTTGCGAGCAAAGTTTTAAATCCTTCCATGCTCTTAGAGAACACATGGCAAAACATTCAGAGGAACAAGAAAAGAAATACTTCTGTGACATTTGTGGGAAAGGGTTCTATTTTTATGATTCTCATGCACGCCATCGAAGGGTGCATTTGGATCCTCTTCTCTTTAGGTGCAGACTCTGTAGTGAGCGATTTCAAACCAAGTTGAAGCTAATAGAACACAAGAAAAGCTGTAAAGTTGTTGCCAAATGTGATAAATGTCTTGAATGCTTTGACACTATTTCTGATTTGAAGAATCACGTGTGCCTTTTTGATGATAACTCTGTTGCCTTATCGTAA
- Protein Sequence
- MEHTGNVCFVCDKTIHSEKWMYKLQETATKKRNVPVVDLIKQLVGDEYVVFVGEQDAICSTCMNMLNLMDSLTAQLGEVQSTLSHLLHSKYDLASDTVKIQYDDTKLEEAEPIHKCETCNFETKYEKEFNMHVRIHEILTSPVKTPPKSVESNILPKVKSSKRIKGKKLKGSTPRSVAKQKKSPQKKTPKQKKIPKPKKTKVVYQCSICDKIFPEESKIREHAKKEHGNDNIVVSDEEEYEDIQTLESDEEIPIKKSPVNKNLSSKKKLTSEKKPPPVKKPSSEKKPPSGKKQSAEKKQSPVKKQSVAKKLSSVKQQSAEKKPPPKKKLPKKQSKKKIQSNTRKSDLDFLDDWEEDDENGDIPSPIKKPKIDVSDTETTQRKSVDEIEDDDKDNVTKPTCMFCKATFSTFESVQDHIKLSHGKQSSHWSVGPKIVAATQGSIASFEIDSTTDILDKKPTLGIDIKLKNHVKKVHYNKAKIDPRRDIKNNTHPSKIVQTPVVKASNSKKISSSMNALEISISEVSSTSFYTEKTLEKENPSVNTDISDEGKQKEEFQSSTHLSRKKVVPTCEECGITFLKQSTLIDHMNRHKAKTCWNLGICIYCSKLFVDKEQLALHTDLIHSNFKSKPALCEPCCKTYLHGKDLKNHFLKMHFSEKTEKLMKQMSEHTLTNDDDNDVYSKVFKELQSITGEGNESEDSLSKKCVECGDKFHDDIHLRFHYQMSHEMKPFKCSMCVKTFNNKKTLVKHESTMHRKTSRPVYFCSECPKSFHSEKRYQIHVGFAHRPIMNCKYCDKSFTEVNKLAFHERHHLKQVKSIYKCNVCGKVLKSQSALKTHKNNHTSNNSMQCEVCEQSFKSFHALREHMAKHSEEQEKKYFCDICGKGFYFYDSHARHRRVHLDPLLFRCRLCSERFQTKLKLIEHKKSCKVVAKCDKCLECFDTISDLKNHVCLFDDNSVALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -