Hvit008255.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961680.1:29709-70446[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.027 3.7 9.0 0.0 2 22 42 62 41 65 0.88 2 13 1.1 1.6e+02 3.9 2.4 5 23 70 89 68 89 0.88 3 13 0.00055 0.076 14.3 0.4 2 23 95 116 94 116 0.96 4 13 0.00046 0.063 14.6 2.0 1 23 121 143 121 143 0.97 5 13 9.3e-06 0.0013 19.9 1.3 3 23 151 172 149 172 0.97 6 13 8.4e-05 0.012 16.9 1.2 2 23 174 195 173 195 0.95 7 13 0.024 3.3 9.2 6.5 2 23 199 221 198 221 0.94 8 13 6.7e-05 0.0094 17.2 1.8 1 23 227 250 227 250 0.97 9 13 0.097 13 7.3 0.2 1 23 256 279 256 279 0.92 10 13 0.055 7.6 8.0 2.9 1 20 288 307 288 309 0.94 11 13 0.00031 0.044 15.1 1.5 1 23 378 402 378 403 0.92 12 13 0.12 16 7.0 4.7 1 23 494 517 494 517 0.93 13 13 2.7 3.7e+02 2.7 0.1 2 22 525 545 525 547 0.86
Sequence Information
- Coding Sequence
- ATGATGGCAAAGAGTACATTAGATGATTCAAAAACGAAGAATACTAGTTTTCCAAAGATAGTTATATCAAAGAAATTTAGGAAGATGGTTAAAATAAAACGAGAAAAATCTAAATCCAAACTAGTTTGTGAGAAGTGTGATGTAAATTTTGCCAATTGGTGGGAAatcagagaacattggatatccAGTGGACACAAAGCACCTGAACAATGTCGTTGGTGTAGTAAGAGAACATTCACTTTGCAAAGCCATCTGTGCAAACAACATTGGAATATTGCAAGTATGTGTACTTATTGTGGTCAGCTCTTCATGTTTCAAGAGGACTTAGAAAAGCATTTACTTTACCACGATAAAACCCAATATCGATGCTTTCAGTGTGGAAGACGGAGAAAGAATGAGGATCTTTTAAATCAGCACATGTACAATCATTTCATTTATGAGAAGTATGGGTGTAATGTTTgtgaaaaaagatttaaaaagaaaaagaacatgGAAAAACACTTACGGGTAATACACTTAATTTGTCAGTATTgtggtaaaaaatgtaatgataaggAAGATTATAAAGCACATGTTGTAACCCATGATGATTTAAAATGCACTTTTTGCAAAAAGATTTTTTCTCAGAAATGTCGCTTGAAGTACCACTACCAGTTGAAACATGGCCATCAAGATTTTTACAAATGCACCATATGTTTCCAAAGATTTGTAACAAAAGGACGGCTGATGGAACACATGAAATTGAGACATAGCGGTAAAGGGAAATTTTCTTGCAAAATCTGTGATGCACCATTCCTATATTGGCAACAATACATCATCCACTTTGAACGTGTCCATGGAAAACCATGTGATCCTAAAAGTTTCAAATGTTCATTCTGCGACTTTAGCACTGACTCAAAATGCAAATTACAGTGGCATGTAGAAAAAGTGTCAGGGACTGGGTTCTTTTGCAAGAAATGTCAAATCCAGATGGACTGTAAAGGAATATACGATAAACACATGGTGATACATGATGGAGAGGAGGTGTGGACATGTGACTTTTGCTGTCGTAGTTTTAACAGTGACAACATTTTGAAGCATCACATCAGTTTATGCCACAGAGAAGAGATGATTGCACAGAATCCTAGAGGCTATCCTTGTCTGGTGGAAGGTTGTGATAGATATTATTCTTTGAAGAACAGCCTCTCAAGGCATATGAGAAGGCATCACTCGGAAAGTCCTGACTTCGGTACCAATCCGATCTGTGCCGAAACGACTGTTGTCTGTCATTCTCCTCTGTTGAGAGAAGGAAAAAAGCGCCAAAGAATATGTAGTACCTCCTCTGAAGATCATGAAGAATATAAACCTATTAAGGAAAAGTCAAACTGTACAGATAACTCGGAAGTATCAAGTGATGCTGATGGTTCATCCAGCAAAAAAGATTTAGATGATTTAAAATCTGATTCTGTTGATCAGTCAATTATAACTGAAGttaatgtgtattattgtaatacCTGCAGTAAGTTCTGGTTCGCTGGAGAGTCGCAATTCAGAAGACACATGAGAACTCACGTCAAAAAAGTTTGGGAAGAAAAATGTTCTACTTGTAACATGATCTTAGATTCCCCTGAAGAAGCTGCTAAACATTATGTGGAAGACCATCTGAAAGTggaatttgtttactaa
- Protein Sequence
- MMAKSTLDDSKTKNTSFPKIVISKKFRKMVKIKREKSKSKLVCEKCDVNFANWWEIREHWISSGHKAPEQCRWCSKRTFTLQSHLCKQHWNIASMCTYCGQLFMFQEDLEKHLLYHDKTQYRCFQCGRRRKNEDLLNQHMYNHFIYEKYGCNVCEKRFKKKKNMEKHLRVIHLICQYCGKKCNDKEDYKAHVVTHDDLKCTFCKKIFSQKCRLKYHYQLKHGHQDFYKCTICFQRFVTKGRLMEHMKLRHSGKGKFSCKICDAPFLYWQQYIIHFERVHGKPCDPKSFKCSFCDFSTDSKCKLQWHVEKVSGTGFFCKKCQIQMDCKGIYDKHMVIHDGEEVWTCDFCCRSFNSDNILKHHISLCHREEMIAQNPRGYPCLVEGCDRYYSLKNSLSRHMRRHHSESPDFGTNPICAETTVVCHSPLLREGKKRQRICSTSSEDHEEYKPIKEKSNCTDNSEVSSDADGSSSKKDLDDLKSDSVDQSIITEVNVYYCNTCSKFWFAGESQFRRHMRTHVKKVWEEKCSTCNMILDSPEEAAKHYVEDHLKVEFVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -