Hvit002774.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961565.1:3019787-3075693[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.37 52 5.4 0.1 2 23 293 314 292 314 0.94 2 11 0.3 41 5.7 0.2 2 11 324 333 323 339 0.82 3 11 6.7e-05 0.0093 17.2 4.9 1 23 701 723 701 723 0.99 4 11 0.0051 0.71 11.3 0.5 1 20 727 746 727 748 0.94 5 11 0.027 3.8 9.0 0.9 3 23 766 786 764 786 0.95 6 11 0.0059 0.83 11.1 0.1 3 23 856 877 854 877 0.92 7 11 0.00038 0.053 14.8 0.5 1 23 882 904 882 904 0.88 8 11 0.00018 0.026 15.8 0.9 2 23 910 932 909 932 0.96 9 11 3.4e-07 4.7e-05 24.4 1.4 1 23 937 959 937 959 0.97 10 11 0.00033 0.046 15.0 3.0 2 23 966 987 965 987 0.97 11 11 1.6 2.2e+02 3.4 0.1 1 10 993 1002 993 1006 0.84
Sequence Information
- Coding Sequence
- ATGATCCTGTGTAAAGCAGAGTCGGCACTCGGCAGACGGCAGCAGAAGCTAGTTCTACTGGGTGAACCAACGGGAGAAGTCATGTATGGATTCATGGAGGATGCATTGGCTGCTGAAGCCAGGAAATTAAGGTGGTGGGGATGCTCCTGGTGGAAAATTCGTCTTTGCAAAGCTTCCGGAAGGGAAACAAAGCACTGTTCAACATGTTCAGGAAAAACTCCTGAGGatGAATGTGAGATATGTGGGAAACCTCACGAGATAGAAAAATGTGACCTTTTAAAGTGCTCTATTGAACAAGTAAAAGATACTTGTACTCCTTCTTATGCTCGCCTAACGTTACCAGATGGCCTTGAAGTGAGGGAGCTATTGGATGGAACCACAAATGTAGTCACAACAAAACCGTTCAGGAAAGGAgtttttttaagtGAAGATGATAGTGTCTATCTTGAATCTTATGAAGAACTGTTCTGCAACTGGATGTGTCTAGTCCCACCTGCAAGTAATAACCAGGAACAAAATTTGTTCTGCTATCAGataggaacaagcatttatttttgtacaatacgAGACATTGAAAAAGGGCAGGAGTTAAAAGTTTGGTATTCGCCTTACTATGGGGAAAAAATGGGCGTACAATCTTTTTCCAAGCAACCAGATCTAATACATTCCTCCGATGAAGAGTTTCAAGAAATCTACACAGCTCTACAAAAAGAGGCTGAAGTACAAGATCATACTTACATTCCaaagttaaagaataaaagaagaagaaaattgcCAAAACCACCAATTTTAGGTGAAAACTACTACCGAGCGATCCCACCGAACGATGTATTACCTGGAGAACTGCTGGGGGCTGTTGAGCGCAAGGGTGAATGGCACTGCAAGGAGTGTGGGCAGGTTGAGACTAATGTGGCTGCCTACGCTCGCCACCTCATGGAGCATTACCGGAATTCTACTGTGAAAACACTCTCTTGTCCCCTTTGTCCTAAGCGGTTCAGAAAAGATGGATATAGTCGAAGAATCCACattgaaatttgtaaagaaaAGCAGACACAAAAAGAATTAGAACAATGTTCAACAACTCCAAACGAGAGTggaaaaagtaatgaaaaatctttacatttagaaatattagcTGGAAGAGAGACAGAAAAAGATGTAACAAAAACATCTAAAGACAATTTAGAAGAAGGTTTgcttagtttagaaaatatttcaagtgcTATCTTGAGTGAACAGCATACAGATAGTAATAGTTTGGCTTTGACCTGTGTCACTCCTTCCCTTTGTAATGTATTGGATGTTAGAATAAAAGATAATCCACAAGATACTCTGATTACTCAATCTAATTTTGATAGCAAGAAAACTAAAGACTCAAATGTGCATGACCCAAGATCTTTGACAAGCACACAATTGGAAGAACTGCCTGCTGCTTTTGGCAACAAAGATTCACAAAATCTtccaaatgaaaacaaaactgataaGTGTGAATGGAATTCTGTTTGTTTAGAAAACAAAGTCGAGAGCTTAGAGAACTTAAAACTCCTTGAAAGTTTGAATGTCGGGGAAAAGAATAACTGGACCAAAGAAAGTAAATCTTTTGAATCTGAGAGAAACATTGGCCTGGAATCATTGGAAGAAAACCTATTGACCAAGTCACTGATACTAGATCTCAGCGATGATCTTgacttcaatatttcaaaatcttttgtAGAAATGATTAATGAGGATTGCAATCTGGATAAGCCCCTGTCATTTCCTAAAAGTAAAAGTTCAGAGCTTTTCTGCAGTATGCCAGGACCAAGTTTGTTGATGCCAGAGACTCCCATGGCACAACCTTCTATTCTTGACTCTACACCATATTACTCTCTGGGCAAGAGTGGGTTCTTGCAGTCCAGTTTCACTTCATGTGATGATGTTACTGATGAAGAGAGGAATAGAATTGTTGAGAATTTGCTCAGTGAAACAGATGAAAAGTATCTTGATTATGAAATGACTGATGGTTGTGTCAGTGACTCTGCATGTAACAACGAAAACAGAACTGAAATGGAACAAACAGTTGATGAATTGTCCAAGGGGAAGTCTAAGAATGAAGGTCATTTTAAGTGTGACATCTGCGCTAAATGTTTTGGAAAGCAAACTTATTTGTTTAGACACCTACGGAAACATACAGGAGAGTTCAGATGTAATGCTTGTTTTATGGTGTTTGCACGTAAAGAGACACTACAAACCCACAAACTTTCGTGTTCCTCTGAGGCACCCACGCAAGAGGCCATGACTCGAACGAGGGTGCATTGTAAGATCTGCAGACAAGACTACCACTCTTTGGCAGCTCTACGGGCTCACATGGAGGCACATTATTGTCAAGGTGAAACATGGAAGTGTGAATGTAAAAAGGTGTCAGATGATCCCTCATTGATTGAGAATCATGGGTGTACTCGCAGCTCTGTGTCCGTAAAATGTGTAGCGTGCTGTAGAACATACTCGTCAACTGAAGAATTTGTTAATCACAAGAACCGAATTGTTATGAAGAAAAAGAGCAAACATAAAGATTTTTCTAccatatgtgaaatttgtggtgCAGTCTTCAAATCACGTACTGGAGTTCGGCTACACAGGATAAATGCACATGGCACTAAAAATCACGAGTGTCCTATTTGTGGCAAGAAGTTCAGCAGGAGTGACATCATGTTGGAGCATAAACTTATACATGAACAAAAGAGCTGGGAATGTGCTGAATGCAAGAAGCAGTTCTCCAGTCAGAAGCGATACAAGAACCACCTCAGAGTGGTGCACTCAAACATCACGTTCATGTGTCAGTATTGTGACAAGGTTTTCCGCCAGAAAGGAAATCTTTTGAAGCACGTGAAGCTCCATAAACCAAGAGCACAGATTCCCTGTACATTCTGTGACAAACAGTTTACAAGCAAAGAGAACCATGAAAATCATATGAAAACACATTTGAACAAACCATTGTATCAGTGCAGCTTGTGTGATAAAAATCTTGTAACAGTGAGTATCCTTGTTAATGCCACAATGgcaataagtataatataa
- Protein Sequence
- MILCKAESALGRRQQKLVLLGEPTGEVMYGFMEDALAAEARKLRWWGCSWWKIRLCKASGRETKHCSTCSGKTPEDECEICGKPHEIEKCDLLKCSIEQVKDTCTPSYARLTLPDGLEVRELLDGTTNVVTTKPFRKGVFLSEDDSVYLESYEELFCNWMCLVPPASNNQEQNLFCYQIGTSIYFCTIRDIEKGQELKVWYSPYYGEKMGVQSFSKQPDLIHSSDEEFQEIYTALQKEAEVQDHTYIPKLKNKRRRKLPKPPILGENYYRAIPPNDVLPGELLGAVERKGEWHCKECGQVETNVAAYARHLMEHYRNSTVKTLSCPLCPKRFRKDGYSRRIHIEICKEKQTQKELEQCSTTPNESGKSNEKSLHLEILAGRETEKDVTKTSKDNLEEGLLSLENISSAILSEQHTDSNSLALTCVTPSLCNVLDVRIKDNPQDTLITQSNFDSKKTKDSNVHDPRSLTSTQLEELPAAFGNKDSQNLPNENKTDKCEWNSVCLENKVESLENLKLLESLNVGEKNNWTKESKSFESERNIGLESLEENLLTKSLILDLSDDLDFNISKSFVEMINEDCNLDKPLSFPKSKSSELFCSMPGPSLLMPETPMAQPSILDSTPYYSLGKSGFLQSSFTSCDDVTDEERNRIVENLLSETDEKYLDYEMTDGCVSDSACNNENRTEMEQTVDELSKGKSKNEGHFKCDICAKCFGKQTYLFRHLRKHTGEFRCNACFMVFARKETLQTHKLSCSSEAPTQEAMTRTRVHCKICRQDYHSLAALRAHMEAHYCQGETWKCECKKVSDDPSLIENHGCTRSSVSVKCVACCRTYSSTEEFVNHKNRIVMKKKSKHKDFSTICEICGAVFKSRTGVRLHRINAHGTKNHECPICGKKFSRSDIMLEHKLIHEQKSWECAECKKQFSSQKRYKNHLRVVHSNITFMCQYCDKVFRQKGNLLKHVKLHKPRAQIPCTFCDKQFTSKENHENHMKTHLNKPLYQCSLCDKNLVTVSILVNATMAISII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -