Hvit024688.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK962576.1:214345-215955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.4 1e+03 1.3 0.2 3 21 198 216 197 217 0.90 2 11 0.053 7.4 8.1 1.7 3 23 223 243 221 243 0.95 3 11 5.1e-05 0.0071 17.6 1.1 1 22 246 267 246 267 0.96 4 11 0.0058 0.81 11.1 1.2 2 23 276 298 276 298 0.92 5 11 0.0042 0.58 11.5 2.3 1 23 305 328 305 328 0.98 6 11 1.6e-06 0.00022 22.3 0.8 2 23 367 388 367 388 0.97 7 11 0.00014 0.02 16.2 1.3 3 23 395 416 393 416 0.95 8 11 0.0031 0.43 12.0 1.1 1 23 422 445 422 445 0.97 9 11 0.0007 0.098 14.0 0.9 3 23 456 476 455 476 0.98 10 11 6.2e-08 8.6e-06 26.7 0.5 1 23 482 504 482 504 0.98 11 11 0.25 35 5.9 1.4 1 20 510 529 510 531 0.83
Sequence Information
- Coding Sequence
- ATGCCTGCAAGTTCATTCAGTATTCCATCAGACATTGGACCAATCAACAAATCAGGAGTCAAGACATTTCTACAGAACCACCAAGGCAATTCGACATTGCATATTGAATCTAAACAAAATTCTTCCTTAAGTACAGACTCGTATGTTGCTAAGTCAGAATCATTAGTTCCAGGTGGTGTAGATATTTCTACATTTGATTGTACTGGTTTGACAGGGTTTCCAGTGAATCGGTTAAAGTCCTGTGAGAATGCAGACGTATTATCAGGCTTAAGTGTTTCGTTAAACAATCCTCTAGCAAATCATCTTCACACTCTGTGTAAAACTAGTAACGAAATGTCACCTGTAGATGTTGAGGAAGTTTGTCCATCTAACATTTCAAAGGATAATAGTAGACTTAGgtctaataataaatgtaaaaagcaAGTCAGAGtgaaatcaaagaaaaataaacttaatcatAAATATCAAGGGAGTTTACCATTGAGGACTGACGAGCATGCCTCAGAAACTTTACCACAATTAAAAGTAGATCAAAATAAATCTGCTGTTAGTGAGACAGATGAAAGTAATAACACAACAAGAGGTTCGTTCTGTAGGGTCTGCTACGTGGAGTGTGGCAGTCTGGAGCTGTTACAGGAACACATTGAGAGGAACGAACTTATGATCTGTCGAGTGTGTACTGCAGAGTTCAACAGCCACAAAGAACTCGAAACTCATTTCTTTACTCACAAAAAGTACAATTGTAAGATCTGCCAAGAGAGGTTTTCTGATAAGAAAAGTCTTTTGGATCATAGGAAAACATCAGTGAGTTGCAGTTATCAAGAGGAATGCAAAGCTTGTGGTAAACAGTTCTTCAGTAAAAAATACCTAGACAGACATAACTTAATATTCCATAACAAGAGTGGTGGACTGTTTAAGTGTGTAGTCTGTGGAAATGGCTTTGTTCTTCTAGAGAAACTGAACCACCACTTGCAAACTTGTCACAATGCTTACGTAAAAGTAGAATGCAGTACTTGTCAAAAATGGTATCTTGGACCAGAAAAGTTGAAGATGCACGTAAAAGCAGCACATCTAGATTGCAACAAGGAACGTGACGCTGTTTGTTCAATTTGTGAAAAGCGATTCTCAAATGTTCAAAACCTGAAGCAACACATGGAAACTCATGACGCTACAGATTGCTTGTGTGACATCTGTGGTAAATCTATTAAAGGGAAATCTGCAATGAAAAGACACATGCAGTACGAGCATTCTAGATCCGGTACATTTGTATGTAAAAGTTGTAATGAACAGTTTGATATGGAGGTGAAATTGATGAGACACAGAAAAAAGGTTCACTCAAAACGAGCAATCCCTCTTCCAGTCTTTTGTGAAATGTGTGGTAAAGAATACAAATCAAAAGCGATTTTGAAAAATCACAGACTTACTCATTTTGACGAAAAACCCTTTGAATGTGAAATTTGTGGTGCTTCATTCAAACAACAAAGCACTCTAAATACTCACAGAAGAGTACACAATAGCGAGGGTAAATTCCGGTGCAATAACTGTGAAATGACTTTCAAGTGGAAACATGTATACGCCAGGCATGCAAAAAAATGTGTGGGCGAAGGatga
- Protein Sequence
- MPASSFSIPSDIGPINKSGVKTFLQNHQGNSTLHIESKQNSSLSTDSYVAKSESLVPGGVDISTFDCTGLTGFPVNRLKSCENADVLSGLSVSLNNPLANHLHTLCKTSNEMSPVDVEEVCPSNISKDNSRLRSNNKCKKQVRVKSKKNKLNHKYQGSLPLRTDEHASETLPQLKVDQNKSAVSETDESNNTTRGSFCRVCYVECGSLELLQEHIERNELMICRVCTAEFNSHKELETHFFTHKKYNCKICQERFSDKKSLLDHRKTSVSCSYQEECKACGKQFFSKKYLDRHNLIFHNKSGGLFKCVVCGNGFVLLEKLNHHLQTCHNAYVKVECSTCQKWYLGPEKLKMHVKAAHLDCNKERDAVCSICEKRFSNVQNLKQHMETHDATDCLCDICGKSIKGKSAMKRHMQYEHSRSGTFVCKSCNEQFDMEVKLMRHRKKVHSKRAIPLPVFCEMCGKEYKSKAILKNHRLTHFDEKPFECEICGASFKQQSTLNTHRRVHNSEGKFRCNNCEMTFKWKHVYARHAKKCVGEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -